Search Results for "linear" - Page 2
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Showing 78 open source projects for "linear"
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This is the program and data to accompany both the thesis and paper under the name A MINE ALTERNATIVE TO D-OPTIMAL DESIGNS FOR THE LINEAR MODEL This contains the program and summary of the data used for the paper.
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Deem
Analyze time-course data with significance tests, clustering, modeling
Use statistical methods to analyze time-course data (gene expression microarray and RNA-seq data in particular, but not limited to). Apply significance tests to filter out only significant genes or time series. Cluster time series into similar groups. Generate network models, including linear or non-linear models. Variable selection and optimization routines included. Written in Scala and R. The application is a cross-platform desktop app with a simple GUI and is fully functional currently. The app was and is developed at the University of Rochester (http://cbim.urmc.rochester.edu) under the GPL 3.0 license. ... -
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InfoSim
A Java Framework for Simulating Information Theory Concepts
...It supports both Classical and Quantum Information Theory fields. It also allows to design a new Information Scheme from scratch. It has a big Math library which supports Abstract and Linear Algebra objects e.g Hilbert spaces. -
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phenotemp
phenological trends using NOAA AVHRR time series
Starting from GIMMS values as ascii data (each line will be treated as individual time series), the application can smooth the ts - values by applying different algorithm that are based on Fouriertransformation. Separation of seasonal figure as well as the detection of linear trends is possible. Possible breaks in longterm mean can be detected with a change-point analysis using CuSum algorithms. Phenological events such as start-of-season, day-of-max/day-of-min, end-of-season can be determined via threshold-based algorithms or via analysis of max. increase of NDVI during green-up. These analyses work also for multimodal phenologies where individual seasons (partly) interfere each other. ... -
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JBernstein
JBernstein: Exploration techniques for non-linear constraint checking
JBernstein is a tool implemented in Java that enables to check whether a polynomial constraint holds for all variables within their domain. It is mainly used in the verification or synthesis of cyber-physical systems where the system model is nonlinear. The tool also supports specifications in assume-guarantee style. The underlying algorithm is based on a translation to Bernstein polynomials, and several optimization techniques are implemented to ensure efficiency. Concerning performance,... -
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Data Matrix
Java Api to manipulate simple on data of Matrix Type
Java Api to manipulate simple on data of Matrix Type. There is lot of usefull methods like resize, insert , remove, sort and lot of other methods. Usefull methods to manipulate with diagonals. For example you can create block diagonal matrix. There is lot of usefull methods to manipulate on mathematic matrix also, like determinant , norm , minor , cofactor , solveLienarSystem , arithmetic operations also and lot more. -
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VOpR
VOpR - a virtual optical rail
...Currently the database can store data about: -optical materials, -spherical lenses, -projection properties of light sensors and eyes, -special wavelengths of light and -optical systems as lists of basic optical elements. 2. The editor of linear optical systems. Some properties of the optical system are calculated in real time. 3. The virtual optical rail as a ray-tracing simulation of the optical system. The goal is to provide fast and useful diagnostic images, not realistic blur. Additionally there is full access to the java source code under the terms of the GPLv3. -
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Interdependent Java frameworks: AMath (abstract numbers support); AFuzzy (fuzzy numbers and methods); AMathSys (flexible solvers of linear and nonlinear algebraic and differential equations); ADSM (multi-criteria ranking and grading of alternatives).
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Snifflib Numerical Library
Open-source computational library written in pure JAVA
The Snifflib numerical library provides honest-to-goodness N-dimensional array construction and manipulation along with standard linear algebra functionality as well as statistics and computational routines in the JAVA language. -
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SLiMScape
A Protein Short Linear Motif Analysis Plugin for Cytoscape
SLiMScape adds Short linear motif discovery tools to Cytoscape, transforming it into a SLiM discovery platform. A tutorial is available at the following URL: http://bioware.ucd.ie/slimscape/ -
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WHATCH'EM
WHATCH’EM simulates mosquito container water temperature
WHATCH’EM simulates the highly non-linear manner in which atmospheric conditions and container characteristics determine water temperature and height, leading to results that are not always intuitive and likely not simulated by simpler empirical models. WHATCH’EM has the capacity to be utilized for other mosquitoes and other container-inhabiting arthropods. -
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Math Simulator
A simulation software for numerical techniques.
Math Simulator is a java-based application which simulates various mathematical techniques.It is extremely useful for the Engineering students and for professionals. Most importantly, unlike most others Math Simulator is an Application rather than a java - library. So, user is not required to have any computer background. A Unique feature of Math Simulator is that it allows you to save queries for later reference. Hence you can save the problems along with their results. -
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HadStat
HadStat is service on cloud,for data analysis using Hadoop MapReduce.
...this service using many technologies , like Hadoop mapreduce, HTML, PHP, Web Service applications, linux server, java, eclipse IDE, with many indicators:Simple moving average (SMA),Exponential moving average (EMA),Smoothed simple moving average (SMMA),Linear weighted moving average (LWMA )on DATA from NYSE daily prices..... -
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f2what
Lapack/quadprog QP for VBA/.Net/Java
...It offers a Fortran77 parser with code transformations, variable disambiguation, and modular output to other programming languages. It also offers already translated versions of Lapack and quadprog to Java, .Net and VBA, to give access to SVD, LU, QR, Cholesky, eigenvalue decomposition, linear system solving and QP optimization in those three languages. -
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Autmated Peptide Screening
Screening peptides for MHC and/or MHC-T cell receptor affinity
...I may or may not work on this project again, the goal would be to introduce amino acids into any protein in openCL to allow automated design on GPU's.Limits-The standard PDB codes used slightly modified, proline not at angles, peptide shld be linear, -
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Galois sub-hierarchy builder
Visualize Galois sub-hierarchy of 2d matrix
GSH builder is a free Galois Sub-Hierarchy visualization tool. The algorithm for calculating GSH is called Pluton and the present Java realization is based on two articles. "Efficiently computing a linear extension of the sub-hierarchy of a Concept Lattice" by Anne Berry, Marianne Huchard, Ross M. McConnell, Alain Sigayret and Jeremy P. Spinrad. "Performances of Galois Sub-hierarchy-building algorithms" by Gabriela Arevalo, Anne Berry, Marianne Huchard, Guillaume Perrot and Alain Sigayret In you're in need of other GSH algorithms or their realizations in C++, you might want to investigate a project called Galicia on sourceforge. ... -
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Zero Sum Game Solver Java Library
Zero Sum Game Solver Java Library
Zero Sum Game Solver Java Library is open source java library to solve 2-player finite zero-sum games. This programs solve zero-sum games with linear programming. -
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Coupling the notion that during the search for the minimum of a function we must pass through its solution with a PSO solution generator engine, is the approach for solving, in time domain, a non-linear algebric-differential system of equations.
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Its an Eclipse 3.5 Plugin. It can be used to find linear paths for unit testing of any method. The linear path covers all the child methods and till leaf level of the hierarchy. The packages which should be covered in the path can be controlled.
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Java ILP is a simple java interface to (mixed) integer linear programming solvers such as lp_solve, Glpk, Gurobi, SAT4J (0-1 ILP), MiniSat+(0-1 ILP), CPLEX, or Mosek. (documentation at http://javailp.sourceforge.net/)
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Numerical math is tool that demonstrates numerical math methods. It includes following areas: interpolation, numerical differentiation, numerical integration, root finding, linear systems, non-linear systems, differential equations.
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swIMP (swig-based Interfaces for Mathematical Programming) provides Java wrappers for solvers written in C or C++. The current focus is on accessing OSI-compatible linear programming (LP) solvers from the Coin-OR-project (e.g. Clp, GLPK, MOSEK, CPLEX).
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Parallel Colt is a multithreaded version of Colt - a library for high performance scientific computing in Java. It contains efficient algorithms for data analysis, linear algebra, multi-dimensional arrays, Fourier transforms, statistics and histogramming
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JHeatChart is a simple Java library for generating heat map charts.
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This game is the generalization of the classic Battleship game to a n-dimensional grid. Rules are the same as the classic game and boats are always unidimensional, but ships can be set in a linear (1D), square (2D), cube (3D) on n-hypercubic grid.
