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The Systems Biology Research Tool (SBRT) is both an application and an application programming interface (API) intended to facilitate the computational aspects of systems biology.
Geneview is a visualisation tool to display genetic sequence data stored in nucleic sequence databases like <A HREF="http://www.ncbi.nlm.nih.gov/Genbank/">GenBank</A>.
Praxiteles is a cross-platform interactive visualization tool for comparative genome map data. It is particularly well-suited to viewing multiple related genomes or chromosome segments that have highly diverged gene content and order.
The LogMeFree is a tool to transform NMEA frames to Google's KML.
The data can be read from a file or directly from a GPS device (i.e. GPS logger, mouse).
RAGE (Random Variate Generator) is a graphical tool for unidimensional discrete distributions. RAGE generates random values and simulates various discrete distributions by using different algorithms.
It provides a graphical animated representation of a network simulation run (e.g. for ns-2). Further, common metrics are calculated and displayed. The tool is written in Java and supplies 2 frontends (applet and stand-alone application).
KNeTS (Knowledge Elicitation Tools) is a survey tool to create multi-agent models based on local knowledge using pattern analysis to identify rules that are iteratively validated with the informant. The final output is a knowledge-based multi-agent model
The Network Camera Tool is a collection of various Java tools that work with cameras and encoders from Axis Communications. Please see the project website http://imagelogistix.sourceforge.net for more details.
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Discrete Event System Specification (DEVS) combined with System Biology Markup Language (SBML) project: a Java-based tool to solve complex biology processes. Support by RTSync Corporation and Arizona Center for Integrated Modeling & Simulation (ACIMS)
This Java program calculates the SPBRG value for a given baud rate (Baudrate) and clock frequency. It comes with a graphical interface and a simple value interpretation guide. A Java Webstart file (.jnlp) is provided.
The aim of this project is to develop a GDSII viewer by using Java programming language. Efforts will be made especially on ease-of-use, efficiency, and capacity.
Automatic Conversion Tool for Accessible Web (ACTAW) is a project that tries to improve the Web Accessibility in an automatic way. ACTAW applies the WAI guidelines 1.0 defined by the World Wide Web Consortium (W3C). Developed in Java.
"Java Artificial Intelligence Markup Language PAD" is a tool that manages ProgramD AI (on local or remote machines) and AIML files with real-time previews and it provides a network support to test AI capabilities over many network protocols.
Tuatara Turing Machine Simulator is a graphical tool for designing and executing Turing Machines. Designed primarily for teaching purposes, it features a simple point-and-click interface.
Similarity Evaluator is a tool to analyse similarity function implementations and algorithms, where is possible to compare several APIs on performance, best result, similarity and discernability values.
JPhysChem - a mathematical modeling toolbox designed to provide an abstract layer and a comprehensive graphical front-end for general model building and specific modeling and data processing in the field of mass spectrometry and physical chemistry.
The Internet Protocol Address Calculator is an open-source java-based tool. This calculator will assist network administrators to perform calculations over both IPv4 and IPv6 address space. A handy whois search client is also integrated into this tool.
Visualization of finite state machines as a network graph. Accepted input files at the moment are: net files exported from xfst (Xerox Finite-State Tool) and lexc files (Finite-State Lexicon Compiler).
The Genomic Diversity and Phenotype Connection (GDPC) written in JAVA uses web services to make XML formatted data publicly available. The GDPC Browser (front-end GUI) can access these services, and other applications can use the API.
JWebPro: A Java tool that can interact with Google search and then process the returned Web documents in a couple of ways. The outputs can serve as inputs for NLP, IR, infor extraction, Web mining, online social network extraction/analysis applications.