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Ober brings the power of the Oberon interface to Java, blending command-line and GUI models. Ancestors are Oberon(http://www.oberon.ethz.ch/), Acme (http://plan9.bell-labs.com/sys/doc/acme/acme.ps) and Wily (http://www.cs.yorku.ca/~oz/wily/index.html).
NeoBio is a Java class library of Computational Biology Algorithms. The current version consists mainly of pairwise sequence alignment algorithms such as the classical dynamic programming methods of Needleman-Wunsch and Smith-Waterman.
idyuts is \"I Dare You to Use This Shell\"; a pre-hibernate approach to replacing an ORM written with jython functors into a pure-Java language command pattern. The \"pipeline codegen artifacts\" are simple IoC templates, and trivial to adapt
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The Mechanical Engineering Department at Oregon State University currently has high-resolution x-ray tomography equipment that allows three-dimensional imaging of the interior of objects. Their existing imaging software is command line based and difficult
A java command-line application where the main goal is to solve any simplex problem. It's a team-work school project. It can be usefull for other students who needs to understand the simplex algorithm.
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A software framework to support distributed evolutionary software development. It dynamically creates a network of nodes that can run a pre-distributed source code (e.g. artificial lifeforms). The results of the calculation will be sent back to the maste
PCB plugin for rat selection. The user supplies a pin list via a text file. The plugin selects the rats which connects the listed pins. This functionality intends to help auto-routing with variable track width. See the web site for more detail.
The program fuses 2 sets of molecules. It tries different relative positions of molecules before binding them, so that there is no or minimal intersection in the resulting molecule. The atom to be fused in a molecule is labeled with an R symbol.
A Java-based mesoscopic, intermodal traffic simulator (MITS), providing a tool to evaluate scenarios (consisting of a road/rail/waterway network topology and load allocation) in terms of throughput, average speeds/travel times, congestion prediction.
This project has adopted a parser for the output of SimIt-ARM's sema_count program. It is useful to get statistically relevant information from the output of a batch run of the simulator.
PhantomPhysics is a physics equation solving program geared towards students in a High School physics class. This program can solve for just about any variable for any equation you might encounter in High School physics. PhantomPysics is written in Java.
GraphSpider is a pattern matcher which searches parsed text in phrase-structure tree or dependency graph format for syntactic structures matching a set of patterns in MPL, a regexp-like pattern language. Applications: information extraction, text mining.
Supertagging is a process of statistical lexical disambiguation, preprocessing step to parsing, which assigns LTAG tree categories to the lexical items present in the input sentence. Thus, if the input sentence is in the form of a dependency tree, the task of the supertagger is to assign the most probable TAG family to each node and edge in the dependency tree.