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PORIS toolkit allows describing graph-based systems and their behavior in a snapshot. It provides a web
editor for a domain visual specific language (DSL) and transformation tools to generate software prototypes, system configurations, ...
RILA is a machine learning software for relational data. It is able to find frequent patterns in a set of connected tables stored in relational database management systems.
SALaMy (Semantic Argument Labelling using Maximum Entropy) is a Semantic Role Labelling project using the Apache UIMA framework. Semantic arguments are labelled based on the Maximum Entropy paradigm.
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The PARSEC CEE is the primary achievement of several years of effort at NASA's Marshall Space Flight Center. The CEE was developed to allow engineers in the Advanced Concepts Department to rapidly prototype launch vehicle and spacecraft concepts.
Wiki system engine that offers support for writing mathematics articles in physics, mathematics, biology, astronomy. Wiki engine is based on javaservlet, java JSP technologies that offers variaty of platform independent features.
HealthCareSim is an SDK for rapid modeling and simulating care delivery systems using the discrete event simulation paradigm. A modular design and useful defaults will enable a Java developer to quickly build prototype models that can be extended.
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The goal of the OSM2PostGIS project is to develop an OpenStreetMap data processor that can import any amount of .osm XML data into a PostGIS database, and produce evaluated navigation network topologies to support routing.
Swarm framework for chemicals, to neurons, to group models and species models and etc. I will try to keep one version of the code independent of any platforms, but I will also be integrating the code with JADE, JBoss and my software.
NG4J - 'Named Graphs API for Jena' is an extension to the Jena Semantic Web framework for parsing, manipulating and serializing sets of Named Graphs. For details about Named Graphs see http://www.w3.org/2004/03/trix/
Pocket Cube J3D is a simulator of a Pocket Cube, in Java language and Java 3D graphics API. Java 3D is available at: http://www.oracle.com/technetwork/java/javase/tech/index-jsp-138252.html
PhenoFam is a web-based application that performs gene set enrichment analysis (GSEA) by employing structural and functional information on families of protein domains as annotation terms.
The Minervan project aims at aiding intelligent software development. It integrates reporting, analysis and data mining to support better decision making.
PhyloPattern is a Java/Prolog API, helpful to simulate human reading of phylogenetic trees. Bioinformatician can: annotate trees, apply complex patterns to a tree to search specific architectures or extract information, compare trees with dynamically gen
* Java classes for parsing text, conversion to XML or to evaluate in Java. The parser is textual-script-controlled with a syntax near Backus Naur Format, named ZBNF. * Some routines for conversion: C-Header or Java to XMI, XML-Documentation generation,