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febrl-gen is a Java-based frontend to Febrl, an open-source data linkage system written in Python. Users can configure the parameters of a linkage project through the frontend, and febrl-gen will generate a Febrl-ready configuration file.
AbuGraph is a freely available Java application for the layout and visualization of directed graphs. Bound to a TCP port, it supports dynamic graph creation receiving commands from a telnet console or another third party application.
Combination of data visualization and data minig. Apllication use iteration through visualization, user interaction a data minig steps to separate data into clusters.
The aim of MIEX (Metadata and Information Extractor from small XML documents) is to create a wrapper for the Stanford Parser, to extract and store metadata (syntactic structures, relationships among words...) from simple XML documents.
Visualization of finite state machines as a network graph. Accepted input files at the moment are: net files exported from xfst (Xerox Finite-State Tool) and lexc files (Finite-State Lexicon Compiler).
Trauma registry suite; Data collection application and server scripts to build trauma data warehouse and perform web-based analysis reporting. Cross-platform compatible for Windows, Apple, Unix, or Linux.
Facelift is a visualization and analysis software for online social networking services. It displays a given community as a node-link diagram and provides several search / filtering functions as well as cluster analysis features.
A visualization of the fourier transform applied to sound data. Analyzes a time-domain sound sample using the Fourier Transform, and graphically displays the results and sound in real time. Attempts to audio into sheet music.
Spectre for mass spectrometry. (Quantitiave) analysis of multiple ls-ms(ms) runs, using mzXML import of raw data. (working on mzDATA). Provides filters, alignment- and export tools.
GSCope3 performs microarray dataanalysis to find correlations between BLSOM clusters and any form of omic knowledge expressed in OSML. Includes example metabolic pathway, gene ontology, genome position, transcription and PPI knowledge in OSML format.
The Genomic Diversity and Phenotype Data Model (GDPDM) captures molecular and phenotypic diversity data. MySQL databases are used to implement the schema. This project develops software tools (written in Java, Perl, etc.) associated with this model.
A user-friendly open-source toolkit written in Java that lets you visualize and analyze the behaviour of users in the ActiveWorlds family of 3D virtual worlds by mapping them over 2D space.
SOMMS is an analysis program for mass spectra intended for bio-informatics research. Its goal is to relate theoretical spectra with raw data. A previous version, accompanying an article published in Rapid Comm. in Mass Spectrometry, was written in Perl.
Open2Dprot is an open-source proteomics project for the development of bioinformatic tools for n-dimensional protein expression dataanalysis of quantified protein expression across multiple samples from research experiments.
geolocate is a front-end java program that works with google maps to provide dynamic maps to users. Combined with the flexibility of XML and the power of javascript, users can see various relationships on their map to draw conclusions.
K-automaton is a new parsing (syntactic analysis) machine isomorphous to language. Implemented in Java. Can generate Java code from grammars described in EBNF.
A collection of novel phylogenetics algorithms that assists biologists, geneticists, and bioinformaticians in the analysis and interpretation of phylogenetic data.
W.H.A.T. is an analytic tool for Wikipedia with two main functionalities: an article network and extensive statistics. It contains a visualization of the article networks and a powerful interface to analyze the behavior of authors.
The Internet Soccer Database aims to build a database structure that can contain all fixtures/results/statistics/odds information for any soccer league/competition. Once the structure is defined the data will be populated and made available for analysis
HidroSIG is a GIS that supports raster and vectorial maps with modules oriented to the hydrological analysis, time series, remote sensing and more. It has been made 100% in java using VisAD for data visualization and using MySQL to storage all data.