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MongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
GeoPMS is a project based full paper management system to archive, search and manage scientific papers. GeoPMS has full text search, search by author, search by title and citation import functionality direct from the PDF header, PDF text or RIS.
Reference list design can be selected for each project.
A realtime HL7 stream based clinical decision support system
HIStream is a clinical decision support system designed to operate on data streams. Rules can be specified using (fuzzy) logic formulas with temporal extensions (e.g. creatinine level high at least 3 days after surgery). All incoming clinical data can be stored in an integrated data warehouse (using postgresql). Additionally, incoming data can be forwarded to the clinical data warehouse project i2b2.
THIS PROJECT IS CURRENTLY IN DEVELOPMENT. FIRST BETA RELEASE WILL BE PUBLISHED JUNE 2015.
3-layer neural network for regression and classification with sigmoid activation function and command line interface similar to LibSVM.
Quick Start: "java -jar nen.jar"
AMODA is a unifying application framework for Java. The name Abstract Modeled Application reflects the idea of an API which models general parts of an application on an abstract level. Entirely developed using the Unified Modeling Language (UML).
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Screensaver is a Lab Information Management System (LIMS) for high-throughput screening of small molecule and RNAi biological assays. It is a Java/JSF/Hibernate/Spring web application that is actively being developed and used at Harvard Medical School.
Note: The Screensaver project has moved to GitHub at https://github.com/hmsiccbl/screensaver.
Remote controlled car model made from mobile phones
Car model carries MCU(STM32L152) unit and J2ME mobile phone. It is controlled via bluetooth from another mobile. Car is able to move, turn, speak and take pictures.
A web based application to track protein related reagents including DNA constructs, cell lines, supes, and purified proteins. Supports creating, tracking, and prioritizing requests for transfections and DNA. Includes search and PDF reports.
A program for converting between physical units, such as feet and meters. There is a Java library, for use in Java applications, and a PalmOS application. It is able to mix units and convert between systems, such as the Metric and the English systems
Everything you need to build production-ready agents and models. Access 200+ Google and third-party AI models and tools.
Gemini Enterprise Agent Platform is Google Cloud's comprehensive platform for developers to build, scale, govern, and optimize agents and models. Choose from Google's most advanced models and third-party models like Anthropic's Claude Model Family.
MetaMaster is a Java-based desktop application for defining, managing and manipulating metadata associated with a collection of data files or datasets (both locally and on the network) which are bundled together into "data packages". ANDS-funded
This is a Java-based project for complex event extraction from text and co-reference resolution. Currently the code can read BioNLP shared task format (http://2011.bionlp-st.org/) and i2b2 Natural Language Processing for Clinical Data shared task format (https://www.i2b2.org/NLP/DataSets/Main.php). Event extraction includes finding events and the parameters for an event in a text.
The method is based on SVM but other ML algorithms can be adopted. The method details are explained in the...
OrthoInspector is a new software system for orthology/paralogy analysis. Its purpose is to facilitate the installation and the maintenance of a database describing orthology/inparalogy relations and to provide tools to exploit these data.
SGI allows to define and interpret most of undeterministic 2D shape grammars. It supports real-time subshape detection and labeled rules. GUI is designed for easy manipulation with shape grammars: creation of shapes, rules and generation of designs.
WSNWARE is an open source Java/OSGi middleware, designed for monitoring, controlling and standardizing Wireless Sensor Network. WSNWARE is a normalized message oriented middleware running on (and developed for) any OSGi containers.
SIMACT is a 3D smart home simulator for activity recognition developped at LIARA during the summer 2009. The goal of SIMACT is to enable scientist to simulate execution sequence of activity inside a smart home to conduct their research.
GeoMondrian is a "spatially-enabled" version of Mondrian. GeoMondrian brings to the Mondrian OLAP server what PostGIS brings to the PostgreSQL DBMS, i.e. a consistent and powerful support for geospatial data. It also provides geo-extensions to MDX.
MedioVis is concerned with the user-centred development of next generation visual information seeking systems for novice and nonexpert users. Various Browsing-oriented data exploration strategies are supported (overview & detail, filtering, zooming etc.)
The Wikipedia Miner toolkit provides simplified access to Wikipedia. This open encyclopedia represents a vast, constantly evolving multilingual database of concepts and semantic relations; a promising resource for nlp and related research.
ToxOtis is a Java interface to the predictive toxicology services of OpenTox. ToxOtis is being developed to help both those who need a painless way to consume OpenTox web services and for ambitious service providers...
A system to perform analysis of large documents for the purpose of cataloging similar documents. Similarity is based upon contextual analysis of these documents done by identifying common words and proper nouns.
jWords is a port of WORDS (by William Whitaker, a free latin-to-english dictionary program written in Ada), to Java. Besides the dictionary will be translated to the German language.
Populating Research Data Australia (RDA) with collection descriptions of Australian-related biomolecular data held in the European Bioinformatics Institute (EBI) databanks. This project is ANDS-funded through the DIISR Education Infrastructure Fund.