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OntoCardio is an initiative to build ontologies for the legacy Cardio Database (Resource of bioinformation on cardiovascular diseases). SMI's Protege and its OWL plug-in has been adopted as the ontology construction and programming framework.
This is the source repository for a research project regarding IT-support in distributed and home-based health care.
The first pilot application is a diabetes followup application. The application uses Semantic Web technology extensively and can be ex
This project will develop cross-platform Java software for interfacing with EEG devices, specifically hardware developed by the OpenEEG project (http://openeeg.sourceforge.net/).
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NeoBio is a Java class library of Computational Biology Algorithms. The current version consists mainly of pairwise sequence alignment algorithms such as the classical dynamic programming methods of Needleman-Wunsch and Smith-Waterman.
The Mechanical Engineering Department at Oregon State University currently has high-resolution x-ray tomography equipment that allows three-dimensional imaging of the interior of objects. Their existing imaging software is command line based and difficult
A java based neural network framework. The Auratus network is built around an XML messaging system, allowing for a complete MVC design. Additionally, Auratus networks are constructed and at the node/edge level, allowing for advanced topologies.
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BioQuery is a bioinformatics tool that acts as a query builder for genetic, protein, publication, and other biomedical databases. BioQuery is also an update service that periodically resubmits saved searches and sends you new data as it is found.
Health Education Assets Library: a national, publicly accessible digital library designed to facilitate uploading, cataloging, retrieval, and metadata exchange of multimedia items for health sciences education.
this java project creates a simple user interface with some basic statistical tools to access the Eye Express(tm) Eye tracker hardware. Including serial port access, etc.
A modular, database-backed system for 5 dimensional (5D) analytical biological microscopy and cell-based screening. Please note - we have moved. Please come visit us and download from our new site at http://cvs.openmicroscopy.org.uk
http://www.princeton.edu:80/pr/pwb/01/0326/1b.shtml
http://www.cs.princeton.edu/immsim/
Immsim is an immune system simulation used by Immunology students and researchers. Currently it is being used at Princeton University.
In the focus of the AURECON project of GMD FIRST and Humboldt University of Berlin tools for timetabling and resource-scheduling for medical units are developed. To test this tool a hospital-scenario generator was developed that shall offered via sourcef
Cooperative effort to develop a Java-XML API and architecture to manage and share health concepts and processes eficiently. Includes a framework to develop healthcare applications (from PDA reminders to hospital information systems) quickly and easily.
The purpose of the project is to develop a quantitative medicalimaging & visualization program for use on brain MR, DTI and MRS data. It is a joint project of the Kennedy Krieger Institute & the Johns Hopkins University, Psychiatric Neuroimaging Lab
This is a collection of different little tools written in MATLAB, JAVA, Python. They all have to to do with Imaging & Microscopy for life science research and related topics or problems. Some of them are meant to be used with ImageJ and MicroManager.
The VIA Imaging Application (VIA) is an open-source Diagnostic Imaging Viewer based on open standards such as IHE, JPEG 2000 and JPIP, and DICOM. VIA is written in Java and is composes of a series of client-server applications.
OMedM (Open Medical Management) is a project that aims at providing a robust and scalable platform for medical information management, initially targeted at hospitals and large medical centres, with flexible access in mind.
JisM is a multi-threads program allowing users to perform segmentation's tasks on a picture. Users could add new segmentation methods as JisM's plugins. Plugins can be written in Java or in Python.
jlpv is a Java Light PACS Viewer application useful for review series or images from DICOM data retrieved from the DCM4CHEE PACS system. It also uses ImageJ as a rendering engine or viewer. This project is in a early stage.