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Cellontro models and simulates cells, other biological entities, and biochemical networks. Specify your models using XML and Java, or SBML. Cellontro is now completely contained within the Xholon sourceforge project.
The JChemPaint Applet and Swing Application are Java programs for drawing 2D chemical structures like those found in most chemistry textbooks. It is based on the Chemistry Development Kit (cdk.sf.net). Downloads, tracker, and source code repository can be found on https://jchempaint.github.io
XML Universal Packet Archiver (PKT) is a platform independant universal file archiving system with pluggable options for encryption, encoding, compression, parity/RAID protection and more.
Java application that can extract meta-data from binary files. xml files are used to describe binary file formats. The resulting data can be saved as xml or transformed into another format.
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A dialect of XUL implementing most of Mozilla XUL's Fourth Draft. XML User Interface Language (XUL) is a method for easily creating GUI applications. Lux XUL supports Python scripting via Jython 2.1.
...Your code instantiates a server, post jobs, and is notified when clients return the results. The clients need not have the job classes. Hedgehog uses JmDNS, XStream, XML-RPC, and Jetty.
Digital graph 1.3 is an advanced JAVA SWING component for modelling, displaying, saving and loading graphs(using XML and XMLSchema). It is fully documented and requires jdk 1.5.x.Version 1.3 adds 9 bug fixs, 3 rengineering and 4 new features.
UML transformation tool; developed in Java and XSLT; Runs on any java 1.3+ platform. Environment for code generation from UML models, based on XMI, e.g. to J2EE, webservices, xml schema; New generators (xslt/java) can be plugged in. www.modelbased.net
Diagram (JGraph) driven simulator. Bondgraphs > nonlinear differantial system > plot: implemented for economics and ecology. Network analysis: emergy propagation implemented. Would also fit for electronics, mechanics, cost, GWP, footprint analysis.
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It is an universal language translator and written in Java. All languages are translated to an unique language (interlingua) and generate any native language from the interlingua. The wordbooks are XML. It use the context of a text, rules and a grammar.
The Network Security Response Framework (NSRF) allows for testing different computer security response engines and methodologies. It supports simulated and real: Intrusion Detection Systems (sensors), Attacks, and Responses.
Framework for storing and editing Forestry-related XML data, with a specialised graphical interface for each object type. Plug-in API for adding functionality. Coded in Java, uses WebStart for distribution, swing GUI, ~100k lines of code.
Catatumbo is a project for developing a SoftPLC based on the IEC 61131 standard. The goal of this project is to provide a solution for industrial control using Java and XML technologies (for cross-platform support).
Phoenix is an information extraction engine written in java.
Controlled by rules (declared in xml), it extracts information form any XML document (unstructured XHTML/OpenOffice documents). Supports XPath, additional conditions and top-down decomposit
DataServer is an XML gateway for medical applications. Using Apache Cocoon and Java, it supports SQL, SOAP, HTTP for patient record aggregation, provides distributed caching, custom views, audit, security, and de-identification/anonymization.
OpenL implements Java-like languages allowing to use code snippets placed in Excel, XML, or DB. OpenL is a foundation for OpenRules http://openrules.com. Maintained from http://openl.org
Pödznsatch is a open and distributed hypergoogle of love. It is a semantic web application for social networking, word-of-mouth analysis and profiling. The Pödznsatch architecture includes a bot crawler, an inference engine and a query interface.
The Jorne project develops software and open standards for linking Lojban text with WWW and Semantic Web metadata (e.g. RDF/N3, RSS, XML). Lojban is an artificial spoken and written language based on predicate logic.
Append hundreds of different XML files into one large data document, validate, and attach a stylesheet. Stitcher is a porwerful summary reporting tool. Allows for complex file storage locations of xml data. UBL, HR-ML, LandXML ... visit stitcher.org.
Web-based Electronic Data Capture (EDC) software for clinical trials. Uses XML-based data store based on CDISC ODM standard for clinical data interchange.
"CAGE", the Computer Audio Garden in Eclipse, is to be an Eclipse-based, Java and XML workbench, for the computer music composer. It will use the Rich Client Platform to provide a basic backbone framework, enabling existing computer music tools to be p