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TiMAT2 contains tools for low and high level genomic tiling microarray analysis using the Affymetrix, NimbleGen, and Agilent platforms. It is designed for processing single and multi chip data sets from ChIP-Chip, RNA difference, and aCGH experiments.
JColorGrid is a Java application for graphical 2D data exploration and rendering of colorgrids, a generalization of the popular heat-map representation. The software exists as a command-line application, a graphical viewer, and an API for development.
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XMPP Web Services for Java (XWS4J) is an implementation of machine to machine communication over XMPP. The communicated content is encoded in XML, according to customized definitions of input and output in W3C XML Schemata.
JStatCom is a software framework that facilitates the creation of JAVA programs for data based analysis tasks in various domains. It provides ways to call routines from specialized software packages, like Matlab, Gauss, Ox, and possibly others.
MACOW is a formal and scalable mandatory access implementation suitable on open worlds such as the provided on Semantic Web, Autonomic Computing and Coaltions and Federations scenarios. It is able to access control on distributed systems.
Nevada is a tool for interactive visualization of dynamic networks. Unlike other dynamic network visualization tools it's focussing on visualizations preserving the user's mental-map. Import of Pajek files is supported.
Clothes - sewing CAD for creation of models of clothes.
Based on the new concept of the automated designing of clothes with use of parametrical model. Creates a base design of model of clothes and allows to change it depending on necessity of updating.
The system is designed for the automated analysis of high throughput sequencing data. At present Aped is focused on the analysis of data derived from Sanger and 454 sequencing. Additional functionality exists for SAGE and taxonomic profiling.
User friendly PDB (Protein Data Bank) file editor with graphic user interface for protein crystallographers to expedite selective parallel edit / data extraction / analysis of their PDB files
Goal of our project CSX (City Stats X) is to program a generic interface to visualize and present social data about a city. We will present this on the example of the city of Linz in Austria.
The application „StockNews“ is to offer the possibility to the user to find out about the interaction between news, analyst opinions and stock exchange rates. Statistics and other relevant data about enterprises are available.
Java package to study a clustering model described in the paper \"Novel Clustering Algorithm Based Upon Games on Evolving Network\" by Q. Li, Z. Chen, Y. He and J-P. Jiang (in arxiv: http://arxiv.org/pdf/0812.5064v1), generalizations and similar issues.
Datamixer generates mock data values for various datatypes, including integer, floating precision, datetime, and string. It can generate complex sequences, based on functions and permutations of the basic data series.
Scan, the Semantic Content ANnotator, is a semantic pipeline that helps connecting information extraction tools to semantic database. UIMA-based, it allows easy plugin-writing: information extraction, ontology control, store in RDF Repositories.
DiscriAlign implements a novel algorithm that aligns a set of biological interaction networks.It identifies both functionally conserved and dissimilar regions.
Draw 2D: function chart, data points chart, statistical bar chart. It's possible to combine all 3 types of chart into one. This is powerfull and easy tool, as it gives ability to manage many charts parameters. This may often compete with Gnuplot and oth
This project focuses on developing geo-visual analytic (GVA) approaches (including both visual and computational methods) to explore spatio-temporal and multivariate patterns (STAMP).
This project provides bookmarklet-based web page overlays based on recognized terms from vocabulary servers. These overlays can be used to assist users with unfamiliar terminology or can be used for annotation of web-based data and literature.
Data and animal management software for large-scale phenotype screening Used by GNF for mouse ENU mutagenesis project. Data visualization & analysis, animal husbandry management, & automated QTL mapping. Usable as stand alone animal husbandry system.
SONIVIS:Tool aims at analysing social (virtual) information spaces like Wikis. These spaces are investigated by using different network definitions (collaboration/information networks). Clustering algorithms and statistiscal analyses are provided.