Open Source FreeBSD Scientific/Engineering Software - Page 3

zkcm library is a C++ library for multi-precision complex-number matrix calculations. It provides a number of functionalities including the LU decomposition, the singular value decomposition, tensor product calculation, tracing-out operations, etc.

newLISP for BSDs, LINUX, MacOS X, SunOS and Win32: small, fast 350+ functions, a -C-, MySQL, PostgreSQL, SQLite, ODBC, TCP/IP, UDP, XML, Java interface, string processing, regular expressions , math, financial, statistical functions, Win32 DLL

Command-line tools for astronomy and astrophysics, written in Fortran.

Linear and nonlinear (from version 2.0.0) finite element analysis of 3-dimensional frames, trusses and other such structures, designed for use in civil engineering. SDL 1.2 or 2 can be used for graphics and an executable file for Window$ is included in version 2.1.0, as well as a program for analysing 2-dimensional structures, written in Sinclair BASIC for ZX Spectrum computers. A free emulator written in JavaScript, i.e. JSSpeccy v1, which was tested in FIrefox 10 from 2012 (and obviously works in all later versions), is also provided.

“garuda” is an intrusion detection system against wireless threats. It is a progressive proof of concept project to ward off wireless threats such as war-drivers, rogue AP, wifi DoS and MAC spoofing attacks. Please enjoy and we welcome your volunteerism.

Maui Scheduler is an advanced reservation HPC parallel batch scheduler for use with Linux and BSD clusters. Maui provides a complete scientific scheduling solution, supporting running custom parallel and MPI jobs over Myrinet and ethernet.

The MPACK project is providing a multiple precision arithmetic version of linear algebra package, similar to the BLAS and LAPACK.

The PUMA Repository is a collection of Pascal units for medical informatics. It contains reusable source code for a wide field of health-care application development. The code includes a support engine for the European Data Format (EDF and EDF+), converting functions for units of measurement and an HL7 engine. PUMA is compatible with Lazarus and Free Pascal. Some of the units also support other Pascal implementations including Delphi, winsoft Pocket Studio and other compilers.

PsiLAB is an environment for scientific research, numerical calculations and generic data analysis. It's written in the functional language O'CaML.

Modernizing the sentential and predicate logic programs, Bertie and Twootie, by cleaning up the code, rewritting the code to conform to the standard Pascal defination, and developing a graphical user interface for both X and MS Windows.

WeeWX is a free, open source, software program, written in Python, which interacts with your weather station to produce graphs, reports, and HTML pages. Downloads can be found at http://weewx.com/downloads Development happens at https://github.com/weewx/weewx

FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences.

This software allows for a user to generate test data. This is useful for testing Hadoop or other data processing clusters.

The ADG library (Automatic Drawing Generation) is a set of functions focused on automating the drawing of mechanical parts. It is not a CAD system but a GObject-based library where a custom application can put common CAD entities such as paths, hatches and dimensions, to automatically create technical drawings. A demo application is provided in order to show the capabilities of the canvas. Although it is possible to interact with the library directly in C (that is what the adg-demo program is doing), the canvas is expected to be used from higher level languages, much in the same way as what done in the GNOME stack. Lua bindings based on LGI are already provided out of the box. The adg-lua project, downloadable from the "Files" section, provides Lua programs and demos that leverages these bindings.

DRAMMS is a software package designed for 2D-to-2D and 3D-to-3D deformable medical image registration tasks. Released by Section of Biomedical Image Analysis (SBIA) at the University of Pennsylvania. Some typical applications of DRAMMS include, -- Cross-subject registration of the same organ (can be brain, breast, cardiac, etc); -- Mono- and Multi-modality registration (MRI, CT, histology); -- Longitudinal registration (pediatric brain growth, cancer development, mouse brain development, etc); -- Registration under missing correspondences (e.g., vascular lesions, tumors, histological cuts). DRAMMS runs in command line in UNIX/Mac OS, It accepts Nifti/ANALYZE/MetaImage image formats. It is fully-automatic --- takes two input images, and generates a registered image and (optionally) the deformation field. More information (installation, tutorial, manual, demonstration, FAQ, etc) can be found at http://www.rad.upenn.edu/sbia/software/dramms/ .

LAMMPS is a classical molecular dynamics simulator designed for parallel machines. It can model atomic, polymeric, biological, metallic, or mesoscale systems using a variety of force fields and boundary conditions and is easy to modify or extend.

This package provides high-level interface utilities for MCMC models via Just Another Gibbs Sampler (JAGS), facilitating the use of parallel (or distributed) processors for multiple chains, automated control of convergence and sample length diagnostics, and evaluation of the performance of a model using drop-k validation or against simulated data. Template model specifications can be generated using a standard lme4-style formula interface to assist users less familiar with the BUGS syntax. A JAGS extension module provides additional distributions including the Pareto family of distributions, the DuMouchel prior and the half-Cauchy prior.

An advanced calculator program that supports programming/scripting, a variety of mathematical functions, and a graphing utility.

ASSL (pronounced AY-sil), is a wrapper around CHP, an established async. process description language. This project provides a set of tools that aid the design, simulation, and synthesis of async. VLSI circuits. Common parser, independent tool projects

A small BOINC control script for Linux and the BSDs. Useful if there's no GUI on the crunching system yet you still want to easily monitor and control BOINC. Requires BOINC version 7.22 or higher.

See TTS demo at: http://rslp.racai.ro/index.php?page=tts This is an entirely written in JAVA project which includes a set of tools and methods designed to enable Multilingual Text-to-Speech (TTS) synthesis. We currently support English and Romanian but we will soon train more models and make them available for download. If you want to read more about our other NLP and TTS tools check out http://nlptools.racai.ro.

A C++ library for the computation of bifurcation diagrams: it provides tools for the integration of systems of ODEs that depend on parameters. A Python interface is included.

Biological Annotation Tool is a general-purpose high speed environment for manipulating biological sequence annotations in multiple input and output formats. A plugin-style API permits much extensibility.

Tools for analysing the degree of folding in the human brain

The program implements a demo application which demonstrates using C++ stream-compatible sockets developed by Maciej Sobczak http://www.msobczak.com/