Javamony
A Student's Approach to the Phylogenetic Problem
... fundamental problems in phylogenetics. Therefore, for my own educational benefit, all code is original. Of course, there are probably a good deal of mistakes as well.
I distribute Javamony, as I did Pysimony, hoping that it will be of educational value to someone else or at least vaguely amusing.
Upcoming features will be:
- Support for Amino Acid sequences
- Support for additional file formats (e.g. Nexus)
- Multithreading
- Additional scoring methods (e.g. maximum likelihood)