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Binding site descriptor generation for SVM based classification.
A set of java programs that extract coordinate and chemical information from PDB files.
The binding site regions are extracted using grid based scheme.
For binding site, spatio-chemical descriptor is generated based on PocketMatch algorithm of Dr. Kalidas (author of this project too).
MSqBAT is a freely-available all-platform software application for label-free quantification of proteins from LS-MS data. It was developed in the lab of Dr. Christoph Rösli at the Heidelberg Institude for Stem Cells and Experimental Medicine (HI-STEM) and the German Cancer Research Center (DKFZ).
It’s main features are
1) Label-free, MS1-based quantification
2) Support both LC-MALDI-MS- as well as LC-ESI-MS data
3) Supports both GeLC-MALDI-MS- and GeLC-ESI-MS data
4) Convenient, graphical user interface
Acknowledgements
The development of MSqBAT is kindly supported by YourKit Java Profiler.
matlab 2D image processing GUI toolbox for flow visualization
A general flow visualization Matlab toolbox for image processing of some common planar/surface visualization techniques from PLIF (Planar laser induce fluorescence) for tracer distribution, BOS (background oriented Schlieren) for density, TSLC (Temperature sensitive liquid crystal) for thermal and PSP (Pressure sensitive paint) pressure distribution measurement. This work is part of author's PhD study, under Dr S. Zhong @ the University of Manchester's supervision, guidance and...
A map-based discussion forum ("argumentation map")
ArgooMap is an online, map-based discussion forum, which allows participants to reference their contributions to geographic locations.
Different versions of ArguMap and ArgooMap/Argoomap were developed by students supervised by Dr. Claus Rinner at Ryerson University (Toronto, Canada) with partial funding from the GEOIDE Network of Centres of Excellence and DAAD, the German Academic Exchange Service.
Past and current developers at Ryerson and the University of Muenster include:
-...
ARTADE (ARabidopsis Tiling-Array-based Detection of Exons) is a standard tool for the automatic annotation of genome-wide tiling-array data in Arabidopsis. ARTADE is a program originally written by Dr. Tetsuro Toyoda, RIKEN, Japan.
DrPangloss is a python implementation of a three operator genetic algorithm, complete with a java swing GUI for running the GA and visualising performance, generation by generation
This projects intends to develop a complete distributed peer-to-peer environment
for running heuristic optimization, modelling, artificial life, etc applications. This involves a network engine, libraries and different user interfaces. All this in java.