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The SrcML Framework allows converting Sourcecode to a XML representation on which tools can then be used to deduce statical data for analyzing and visualizing the initial source. It also provides easy ways to write programs which modify other programs.
Java editor for petri nets, based on the ARP analyzer. Exports nets to GIF, JPEG, PNG, PPM, ARP and PNML (XML based) file format. Uses the excellent JHotDraw 5.2 framework.
JXML2OWL Project is divided in two sub projects: JXML2OWL API, a library for mapping XML schemas to OWL Ontologies on the JAVA plaform. JXML2OWL Mapper, an easy to use standalone application with a graphical user interface using the JXML2OWL API.
TRANSFOG DAS (Translational and Functional Onco-Genomics Distributed Annotation System) is an XML-based annotation system to allow the discovery and analysis of candidate genes potentially involved in cancer onset and progression.
BioMa is a specimen based Biodiversity database Manager. It is designed to store, organize, and manipulate biodiversity-related scientific data, either for the purposes of museums, scientific collections, or research projects.
FormatCheck screens flat files looking for violations in the format of the data. It uses a set of XML files that define the rules for each file format. The Swing front-end allows the user to run the verification, view and print the errors.
PROMI is a Platform for the Reuse of Ontologies through Merging and Integration. It imports ontologies represented as OWL, RDF(S), DDL, DTD and XML schemas and incrementally merges their contents using various matching algorithms.
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In silico experiments. Express Taverna's workflows using XQuery. Integrates with Taverna, provides automated XQuery generation from SCUFL. A standard Taverna processor that runs XQuery. Easy XML transformations inside Taverna workflows.
Ergo is a controller software for the classic line ergometers of Daum electronics (http://www.daum-electronic.de/). features: xml-based programmes, Person history
SENTENSA Knowledge Miner is a platform independent tool for searching any text. SENTENSA uses robust methods of indexing and searching text, leveraging on experience from more than 20 years of information retrieval.
This software make stats about countries in Hattrick (http://hattrick.org). About all the leagues and generate the results in a excel file. Its very easy to use, and written in Java.
XAlgo is a xml-language to freely describe algorithms. With this software you are able to validate and even translate those XAlgo-Documents into normal sourcecode (currently Java and C++).
Jef-X willl come to be a very usefull platform independent tool to help enginers to calculate 3D spatial porch using springs, bars and frames (the finite elements). It uses JavaScript and XML to build and run structure objects.
Cellontro models and simulates cells, other biological entities, and biochemical networks. Specify your models using XML and Java, or SBML. Cellontro is now completely contained within the Xholon sourceforge project.
The JChemPaint Applet and Swing Application are Java programs for drawing 2D chemical structures like those found in most chemistry textbooks. It is based on the Chemistry Development Kit (cdk.sf.net). Downloads, tracker, and source code repository can be found on https://jchempaint.github.io
It is an universal language translator and written in Java. All languages are translated to an unique language (interlingua) and generate any native language from the interlingua. The wordbooks are XML. It use the context of a text, rules and a grammar.
XML Universal Packet Archiver (PKT) is a platform independant universal file archiving system with pluggable options for encryption, encoding, compression, parity/RAID protection and more.
A dialect of XUL implementing most of Mozilla XUL's Fourth Draft. XML User Interface Language (XUL) is a method for easily creating GUI applications. Lux XUL supports Python scripting via Jython 2.1.
Digital graph 1.3 is an advanced JAVA SWING component for modelling, displaying, saving and loading graphs(using XML and XMLSchema). It is fully documented and requires jdk 1.5.x.Version 1.3 adds 9 bug fixs, 3 rengineering and 4 new features.
Hedgehog is a Java library for simple distributed computing. Your code instantiates a server, post jobs, and is notified when clients return the results. The clients need not have the job classes. Hedgehog uses JmDNS, XStream, XML-RPC, and Jetty.
Diagram (JGraph) driven simulator. Bondgraphs > nonlinear differantial system > plot: implemented for economics and ecology. Network analysis: emergy propagation implemented. Would also fit for electronics, mechanics, cost, GWP, footprint analysis.
Phoenix is an information extraction engine written in java.
Controlled by rules (declared in xml), it extracts information form any XML document (unstructured XHTML/OpenOffice documents). Supports XPath, additional conditions and top-down decomposit