genomics free download

Showing 4 open source projects for "genomics"

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1

ReferenceFree

Scripts for reference free genomic analysis

These are Python scripts plus C/C++ programs for automating the reference free genomic analysis described in: Kua C-S, Ruan J, Harting J, Ye C-X, Helmus MR, et al. (2012) Reference-Free Comparative Genomics of 174 Chloroplasts. PLoS One 7(11). http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0048995 Analytical concept conceived by CHCannon and CSKua. Original script written in Mathematica by CHCannon.

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Last Update: 2014-11-10
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2

CisPlusFinder

A comparative genomics method for finding cis-regulatory modules

CisPlusFinder predicts cis-regulatory modules based on perfect local ungapped sequences using comparative sequence data from multiple organisms. An overview of the CisPlusFinder can be found in the flowchart.tif file and is described in the following publication: Pierstorff, N., C.M. Bergman & T. Wiehe. (2006) Identifying cis-regulatory modules by combining comparative and compositional analysis of DNA. Bioinformatics 22:2858-2864. http://www.ncbi.nlm.nih.gov/pubmed/17032682

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Last Update: 2012-02-20
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3

Sage Bionetworks

Opensource software projects for genetics and genomics from Sage Bionetworks.

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Last Update: 2015-07-28
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4

cladCode

cladCode: cladistically correct encoding of gene order data suitable for phylogeny reconstruction using MP or ML methods. Keywords: biology, phylogeny, genomics, gene order.

Downloads: 0 This Week

Last Update: 2014-05-25
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