Search Results for "em clustering algorithm"
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Showing 2 open source projects for "em clustering algorithm"
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QSdpR
Viral Quasispecies Reconstruction software based on QSdpR algorithm
This is a viral quasispecies reconstruction software for quasispecies assembly problem on mRNA viruses, which is based on a correlation clustering approach and uses semidefinite optimization framework. The software accepts a reference genome, a NGS read set aligned to this reference and set of SNP locations in the form of a vcf file and outputs an optimal set of reconstructed species genomes which describes the underlying viral population. -
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EMPEPA is software that permits to find the most likely rates of a PEPA model according to a set of sample executions by using the EM algorithm. It uses the GNU Scientific Library (GSL).
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