Search Results for "compute"
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Showing 34 open source projects for "compute"
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Multifario is a C API for computing manifolds. The manifold is represented as an atlas of charts whose domains are balls. Multifario can compute implicitly defined manifolds and invariant manifolds. See also https://multifario.sourceforge.io/ Keywords: Continuation, Bifurcation.
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...Pre-built Windows x64 installer available at https://buymeacoffee.com/nathancrews/e/255640 LAS/LAZ Pointcloud Windows Shell Extension: This "quick viewer" shell extension provides a Windows File Explorer right click menu option to quickly generate 3D preview images for large and small .las and .laz files. (Disclaimer: Processing time depends on compute hardware) Typical processing time for 100mb .las is about 2 seconds. 25mb .laz file process in about the same times. Files are processed in parallel using available CPU cores. Pre-built Windows x64 installer available at https://buymeacoffee.com/nathancrews/e/255641
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libpasastro
Provide Pascal interface for standard astronomy libraries
Provide shared libraries to interface Pascal program with standard astronomy libraries. libpasgetdss.so : Interface with GetDSS to work with DSS images. libpasplan404.so: Interface with Plan404 to compute planets position. libpaswcs.so : Interface with libwcs to work with FITS WCS. This libraries are used with the following projects: https://sourceforge.net/projects/skychart/ https://sourceforge.net/projects/ccdciel/ https://sourceforge.net/projects/virtualplanet/ https://sourceforge.net/projects/virtualmoon/ -
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Tables of the Sun
A Re-implementation of Newcomb's Theory of the Sun
Simon Newcomb published his theory, known as Tables of the Sun, in 1898. It was used by the American Ephemeris and the Astronomical Almanac into the 1980's to compute the daily positions of the Sun. This Theory is a semi-analytic model which expresses quantities as a trigonometric series with numerical coefficients. This type of model produces a compact computer function which has enough accuracy to be useful to most users. My goal is to create a model using C which will reproduce exactly the results published in the Astronomical Almanac for the years 1981, 1982 and 1983. -
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progrep
Utility to show live progress, status & stats for running simulations
progrep is a command-line tool (Linux) to show live progress report, status & stats of a running simulation or compute job that executes a given number of iterations. It shows % completed, time remaining, time elapsed, number of threads, MPI_Rank(if any), CPU usage & speed (FPS). The FPS measures may be used in benchmarking, e.g. while optimizing HPC algorithms for performance. progrep supports both single-threaded and parallel (multicore/multinode - e.g. -
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CUDALucas
A program that uses CUDA to accelerate the Lucas Lehmer test.
CUDALucas is a program implementing the Lucas-Lehmer primality test for Mersenne numbers using the Fast Fourier Transform implemented by nVidia's cuFFT library. You need a CUDA-capable nVidia card with compute compatibility >= 1.3 up to CUDA 6.5, 2.x up to 7.0 and 3.x for >=CUDA 8.0 . The program is run from the command line, however it can be configured without using a terminal. See the Wiki for more details. README for new users available at the Files/Downloads page. -
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AnharmoniCAOS
Cagliari-Orsay model for anharmonic molecular spectra in 2nd order PT
Given dynamical coefficients and/or derivatives of the ionic potential with respect to normal (harmonic) vibrational modes, compute anharmonic energies and electric dipole-permitted transitions and intensities using nearly-degenerate perturbation theory (i.e. properly accounting for Fermi and Darling-Dennison resonances). -
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MELTING is a software to compute, for a nucleic acid duplex, the enthalpy and the entropy of the helix coil transition and then the melting temperature. Four types of hybridization are possible : DNA/DNA, RNA/RNA, RNA/DNA and mRNA/RNA.
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Barracuda is a high-speed sequence aligner based on Sanger's BWA and utilizes the latest Nvidia CUDA architecture for accelerating alignments of sequence reads generated by next-generation sequencers.
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yalotto
Basic interpreter with primitives to play lotto games
Yalotto is yabasic interpreter with specific extensions that allow to easily write basic programs to manipulate the combinations of these games. It can help in building covering set, generating openwheel or sorting existing wheel. It support that each combination of the game have differents weights and compute the coverings according these weights. It can support up to pick 10 games with a number of balls in the game over 70 in many cases. -
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gtkhst is a collection of GLib2 objects to compute statistics (mean, variance, correlations) in 1 and 2 dimensions and a set of Gtk2 widgets to display 1D and 2D histograms as well as trace plots showing the evolution with time of the monitored quantity
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SSLTool is a Matlab based toolbox for bioelectromagnetic data (EEG/MEG) visualization, surface Laplacian calculation and modeling. It can compute surface Laplacian on realistic head surfaces given by a triangular mesh. It has a friendly GUI.
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Center for Parallel Computing
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dna-bison
Bisulfite alignment On Nodes of a cluster
Bison allows users with access to a computer cluster to rapidly align whole-genome bisulfite sequencing or RRBS reads. It can align both directional and non-directional libraries and uses bowtie2. Multiple compute nodes are not absolutely required, but will make the alignment process faster. Further details available on the Wiki page. Help also available on SEQanswers (http://seqanswers.com/forums/showthread.php?t=31314) or by creating a ticket here. You can now track the development on github (https://github.com/dpryan79/bison). ... -
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TIDES
Taylor series Integrator for Differential Equations
Taylor series Integrator for Differential EquationS. This software is developed by Profs. A. Abad, R. Barrio, F. Blesa and M. Rodriguez, (GME, University of Zaragoza, Spain). It consists on a C (Fortran) library, libTIDES, and a Mathematica package, MathTIDES. (MathTIDES requires Mathematica version >= 7.0) . Basic references: * A. Abad, R. Barrio, F. Blesa, M. Rodriguez, 2012. Algorithm 924: TIDES, a Taylor series Integrator for Differential EquationS, ACM TOMS. 39, no. 1, art. 5.... -
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MolSig
The Stereo Signature Molecular Descriptor
An algorithm to compute molecular graph descriptors considering the stereochemistry of the molecular structure, based on our previously introduced signature molecular descriptor. The algorithm can generate two types of descriptors, one which is compliant with the Cahn-Ingold-Prelog priority rules, and a faster one based on our previous definition of a directed acyclic graph that isaugmented to a chiral molecular graph. -
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XFUNC 2.2 is a IBM PC program for DOS. It is an aid to Electronics Engineer who calculates transfer functions using symbolic algebra. It compute the frequency domain transfer function of a circuit in symbolic format, given a circuit description netlist in linear model. Calculate AC or DC symbolic transfer function in S-domain for Linear Circuits or Z-domain for Switching Circuits. Accept resistors, capacitors, inductors, dependent sources, ideal opamps, and ideal switches. ...
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Hy3S uses advanced MPI parallelized hybrid stochastic simulation methods to quickly compute the dynamics of biochemical networks with thousands of species/reactions. Many features included (see Home Page). An easy-to-use GUI (Matlab req) is included.
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ParaSim
Parallelized calculation of molecular similarities
...As as special feature, ParaSim allows to store and and to access frequently queried datasets as persistant objects in memory for short response times. ParaSim calculates chemical similarities based on binary structural fingerprints. It does not compute fingerprints by itself but relies on third party software to do so. Basically, all types of structural fingerprints which can be stored in an array of bits (a bitset) can be used by ParaSim. See the Wiki (https://sourceforge.net/p/parasim/wiki/Documentation/) for detailed documentation. FEEDBACK HIGHLY APPRECIATED! -
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GPDC
Gravity Potential Derivatives Calculator
GPDC is a C file to compute partial derivatives of a gravity potential up to any order by means of an automatic differentiation method. -
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Command line / filter tool - Analyze, compute and transform numerical data tables of unlimited length
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Bouc-Wen-Baber-Noori model of hysteresis
Compute parameters of the Bouc-Wen-Baber-Noori model of hysteresis
This toolbox computes the parameters of the Bouc–Wen–Baber–Noori hysteresis model using Multiobjective optimization evolutionary algorithms (MOBEAs). The toolbox uses the NSGA − II algorithm, which is an elitist non–dominated sorting EA. The toolbox uses the original NSGA-II algorithm developed by Prof. Kalyanmoy Deb, which can be download from: http://www.iitk.ac.in/kangal/codes.shtml Prof. Deb allowed me to use and post this toolbox. For further information about the toolbox read... -
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MESH is a tool that measures distortion between two discrete surfaces (triangular meshes) using the Hausdorff distance to compute a maximum, mean and root-mean-square errors between two given surfaces. It also displays the error values on the surface.
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pMap is an MPI-based tool to parallelize the alignment step of state-of-the-art sequence mapping programs. It allows transparent execution of the alignment step of a selected program in parallel on a compute-cluster.
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FastPval is multiple stage p-value computing software that computes empirical p-values from a large set of permutated/resampled background data.
