Search Results for "linux command line" - Page 5
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Showing 769 open source projects for "linux command line"
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The libbuspirate is a C library to talk with the bus pirate hardware (http://dangerousprototypes.com/docs/Bus_Pirate) in raw, binary scripting mode. The libbuspirate allows to quickly write a short C program to test interfacing with your favorite hardware. The library has mainly be used to interface through SPI with RF transceivers such as CC2500, MRF24J40, Ethernet controller such as ENC28J60, EEPROMs such as 24C02, 24FC1025, LCD display (PCD8544 / Nokia5110), LED display (HT1632), ......
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BRL-CAD
Open Source Solid Modeling CAD
BRL-CAD is a powerful cross-platform constructive solid geometry solid modeling system that includes an interactive geometry editor, ray-tracing for rendering & geometric analyses, network distributed framebuffer support, image & signal-processing tools. -
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Distributed MultiThreaded Checkpointing
Checkpoint/Restart functionality for Linux processes
DMTCP (Distributed MultiThreaded Checkpointing) transparently checkpoints a single-host or distributed computation in user-space -- with no modifications to user code or to the O/S. It works on most Linux applications, including Python, Matlab, R, GUI desktops, MPI, etc. It is robust and widely used (on Sourceforge since 2007). Among the applications supported by DMTCP are MPI (various implementations), OpenMP, MATLAB, Python, Perl, R, and many programming languages and shell scripting... -
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ccplot
CloudSat and CALIPSO plotting tool
ccplot is an open source command-line program for plotting profile, layer and earth view data sets from CloudSat, CALIPSO and Aqua MODIS products. -
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proof-logic
Proof Logic : A logical framework for theorem proving
Proof Logic is a functional and equational logical framework for theorem proving based on Combinatory Logic and Lambda Calculus, whose expressions are both terms and proofs proving the equality between two terms. -
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medical image analysis
Libraries and command line tools for medical image processing.
This software provides libraries and command line tools for the processing and analysis of gray scale medical images. -
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Tahoe is a research-oriented platform for the development of numerical methods and models for the simulation of complex material behavior.
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progrep
Utility to show live progress, status & stats for running simulations
progrep is a command-line tool (Linux) to show live progress report, status & stats of a running simulation or compute job that executes a given number of iterations. It shows % completed, time remaining, time elapsed, number of threads, MPI_Rank(if any), CPU usage & speed (FPS). The FPS measures may be used in benchmarking, e.g. while optimizing HPC algorithms for performance. progrep supports both single-threaded and parallel (multicore/multinode - e.g. OpenMP/MPI) jobs. progrep can also... -
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IMMpractical implements various Markov chain model-based methods for analysis of DNA sequences. Please cite: Sparks, M.E., Brendel, V. and Dorman, K.S. (2007) Markov model variants for appraisal of coding potential in plant DNA. LNBI. 4463:394-405.
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fas2svg
Visualize genetic code structure from fasta file.
Generate svg file from fasta file. -
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Jojos Binary Diff
Binary Diff and Undiff Utility
JDIFF is a program that outputs the differences between two binary files, either in binary format or in human readable format (detailed or summarized) and then allows to reconstruct the second file from the first one and the diff-file. -
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OzGIS free open-source mapping system
Analysis and display of Census, business, government attribute data
OzGIS is an extensive mapping system for the analysis and display of geographically referenced data. Map data are downloaded from Census bureaux and map agencies or extracted from your own databases. The system can be used to to support management decisions associated with, for example, government planning, marketing, sales, site and personnel location, advertising and research. Systems for Windows, Mac and Ubuntu, source code, sample data files and manuals are included. DOWNLOAD to... -
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amilab is a tool for image processing that includes its own scripting language, and an interface for visualizing 2d/3d images and 3d surfaces. Its main application is medical image processing.
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Programmer's library for random numbers. Also random number generator testing code. Intended for simulation, games and "Monte-Carlo" algorithms.
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EtherLab EtherCAT Master
IgH EtherCAT Master for Linux
This project has been moved to https://gitlab.com/etherlab.org/ethercat. -
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Microarray assosiated motif analyzer
Cis-element prediction tool from microarray data
We developed a novel clustering-free method, microarray-associated motif analyzer (MAMA), to predict novel cis-acting elements based on weighted sequence similarities and gene expression profiles in microarray analyses. Simulation of gene expression was performed using a support vector machine and based on the presence of predicted motifs and motif pairs. The accuracy of simulated gene expression was used to evaluate the quality of prediction and to optimize the parameters used in this... -
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Time Ephemerides
Calculate time ephemerides in convenient form
Project to calculate and distribute the general relativistic corrections to clock rates for the surfaces of various solar system bodies. These corrections are also known as time ephemerides. -
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The latest ESMF development is happening in GitHub: https://github.com/esmf-org/esmf https://earthsystemmodeling.org The Earth System Modeling Framework provides high-performance software infrastructure and superstructure for the construction and coupling of climate, weather, and data assimilation applications.
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APBS
Biomolecular electrostatics software
This software has moved to http://www.poissonboltzmann.org/. -
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OpenMultiphysics
Application Integration for HPC Multiphysics
The OpenMultiphysics project is the home for community-driven development of application integration technologies designed to aid in the design and implementation of multiphysics simulation capabilities. Design and development in this project is driven by the Consortium for Open Multiphysics. Feel free to visit us at our GitHub site as well: https://github.com/IllinoisRocstar/IMPACT -
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epidaurus
tumor epigenetic database
Epidaurus is a collection of epigenetic datasets including transcription factor ChIP-seq, histone ChIP-seq, DNase-seq, FAIRE-seq, DNA methylation, etc. It also includes commonly used genome features (GC content, conservation) and RNA-seq. A user friendly interface has been developed to interrogate and visuzlize these datasets. -
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SparthMP
SparthMP is an ANSI-C math library for Multi-Precision calculations
SparthMP is an ANSI-C math library for Multi-Precision calculations, i.e. beyond float/double domain. It supports regulated accuracy of calculations. For algorithm design with this library you should have an understanding of rounding errors in math. -
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