Showing 13 open source projects for "regular expression tool"

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  • 1

    MPIGeneNet

    Parallel tool to construct gene co-expression networks

    MPIGeneNet is a parallel tool to construct gene co-expression networks using Pearson’s correlation and Random Matrix Theory (RMT). This tool takes as input a matrix with the expression values (a float value) for different genes observed from several samples. It is a parallelization of RMTGenNet tool (https://github.com/spficklin/RMTGeneNet). MPIGeneNet integrates the whole procedure of creating the in one program, which makes the tool easier to work with (the users only have to launch the application once) and avoids writing/reading from intermediate files among the modules.
    Downloads: 0 This Week
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  • 2
    Social Network Visualizer

    Social Network Visualizer

    Social Network Analysis and Visualization software

    Visit our new site: http://socnetv.org Social Network Visualizer (SocNetV) is a social network analysis and visualization application. You can draw a social network (graph/digraph) or load an existing one (GraphML, UCINET, Pajek, etc), compute cohesion, centrality, community and structural equivalence metrics and apply various layout algorithms based on actor centrality or prestige scores (i.e. Eigenvector, Betweenness) or on dynamic models (i.e. Kamada-Kawai spring-embedder)
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    Downloads: 374 This Week
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  • 3
    basic_numerical_methods

    basic_numerical_methods

    Didactic application to aid students in learning Numerical Methods;

    A practical tool (for students and engineers) to foresee the result of calculus exercises. Calculation and visualization numerical methods for nonlinear equation, ODE, integration, linear system, polynomial fitting,.....
    Downloads: 1 This Week
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  • 4

    ParBiBit

    Parallel tool to search biclusters on binary datasets

    ParBiBit is a parallel tool to accelerate the search of biclusters on binary datasets, especially useful for gene expression data. This tool receives as input the expression values of n genes and m samples in a file with ARFF extension and returns a file with the biclustering information.
    Downloads: 0 This Week
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  • 5

    MPICorMat

    Parallel tool to construct correlation similarity matrices

    MPICorMat is a parallel tool to construct correlation similarity matrices as part of the procedure to generate gene co-expression networks. This tool takes as input a matrix with the expression values (a float value) for different genes observed from several samples. It is a parallelization of the first module of the RMTGenNet tool (https://github.com/spficklin/RMTGeneNet).
    Downloads: 0 This Week
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  • 6
    Acoustic Research Tool (ART)

    Acoustic Research Tool (ART)

    Acoustic Simulation Library for Frequency and Time Domain Simulations.

    ART is a flexible simulation framework for wind instruments. It includes a growing library of modelling elements. So far bore discontinuities, branches, tone holes, cylindrical and conical tubes, Bessel horns and bent tubes are available for frequency domain modelling. In the time domain generic bidirectional propagation elements, scattering elements, fractional delays, convolution with reflection functions and general z-domain networks are available and can be described using MuParserX...
    Downloads: 0 This Week
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  • 7
    Word Count

    Word Count

    Count the number of words on a specific news website

    A tool to collect number of instances of a certain word or expression that appear in specific online news providers. The tool allows to define website servers, and a time window. It will then divide the time window in smaller steps, and download the search results for each sub-time frame. The chart shows the number of hits by sub-time period.
    Downloads: 0 This Week
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  • 8
    Tautomaton is a C++11 -template library for deterministic (DFA) and non-deterministic finite automata (NFA). It supports regular expressions and efficient input matching of multiple regexps simultaneously. The library comes with a somewhat grep-like command-line tool for showcasing these features.
    Downloads: 0 This Week
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  • 9
    Plot is a lightweight tool, easy to use, that plots mathematical functions. The program has a built-in math expression interpreter that let the user type directly the function expression (eg (x+1)*sin(x/8)/cos(x) ) to plot.
    Downloads: 0 This Week
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  • 10

    RNAseqR

    RNA-seq expression analysis tool

    RNAseqR is designed for expression analysis of RNA-seq data, and is best suited for analysis of multiple, unreplicated libraries. It is a C++ coded program currently compiled for Linux systems. With GUI and command line interfaces, it can do log, PPM, and/or RPKM (if lengths provided) transformations, as well as, statistical analysis for differential expression, using the negative binomial cumulative distribution function (CDF) or the R test statistic introduced for EST analysis by...
    Downloads: 0 This Week
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  • 11
    A tool for visualizing regular polytopes in stereographic projection. Capabilities include: a large database of Coxeter polytopes, 6-axis motion control, animation, fly-though, stereo viewing, high-res capture, depth-blur, and many style options.
    Downloads: 0 This Week
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  • 12
    SymDiff is a little command line tool for symbolic differentiation and expression evaluation. Furthermore, the code can be used for the symbolical implementation of certain mathematical algorithms that require derivatives.
    Downloads: 0 This Week
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  • 13
    Pattern matching C++ library for simple regular expression in utf8 encoding.
    Downloads: 0 This Week
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