Showing 21 open source projects for "evolution simulation"

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  • 1
    Quantum++

    Quantum++

    Modern C++ quantum computing library

    ...Quantum++ is not restricted to qubit systems or specific quantum information processing tasks, being capable of simulating arbitrary quantum processes. The main design factors taken in consideration were ease of use, high portability, and high performance. The library's simulation capabilities are only restricted by the amount of available physical memory. On a typical machine (Intel i5 8Gb RAM) Quantum++ can successfully simulate the evolution of 25 qubits in a pure state or of 12 qubits in a mixed state reasonably fast.
    Downloads: 0 This Week
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  • 2

    Nemo

    Individual-based forward-time genetics simulation software

    Nemo is an individual-based, forward-time, genetically explicit, and stochastic simulation software designed for the study of the evolution of life history and quantitative traits, and genetic markers under various types of selection, in a spatially explicit, metapopulation framework.
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    Downloads: 5 This Week
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  • 3
    C++QED

    C++QED

    A framework for simulating open quantum dynamics

    C++QED is an application-programming framework for simulating open quantum dynamics in general. It has demonstrated the ability to simulate full Master equation of up to several thousand, and quantum trajectories of up to several hundred thousand dimensions. The basic idea is to allow users to build arbitrarily complex interacting quantum systems out of free subsystems and interactions (elements), and simulate their time evolution with a number of available time-evolution...
    Downloads: 0 This Week
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  • 4
    powerfactory-fmu

    powerfactory-fmu

    The FMI++ PowerFactory FMU Export Utility

    ...Additional files (e.g., time series files) and start values for exported variables can be specified. Currently, two types of simulations are supported: In quasi-static steady-state simulations a power system’s evolution with respect to time is captured by a series of load flow snapshots. RMS simulations allow to calculate the time-dependent dynamics of electromechanical models, including control devices (new in version v0.6).
    Downloads: 4 This Week
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  • 5
    Elle Microstructural Modelling
    The goal of the Elle Project is to provide a general purpose modelling environment for the simulation of rock microstructure evolution. The code is based around a unified description of 2D microstructure.
    Downloads: 0 This Week
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  • 6
    EtiC Galaxy simulation

    EtiC Galaxy simulation

    Galaxy extraterrestrial life simulation

    EtiC is a galaxy simulation software that generates and renders a mock galaxy for rational estimation of the number of extraterrestrial civilizations. Stars and planets are simulated with plausible physical characteristics, based on user-adjustable parameters. An EtiC simulation run consists to generate a galaxy disk physical stars, associate planets to the stars, and for habitable planets, simulate the life stages evolution until extinction.
    Downloads: 2 This Week
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  • 7

    GenCodeGenerator

    C++ class to generate biologically plausible genetic codes

    The "GeneticCode" C++ class is designed to generate versions of the genetic code subject to the requirements of the three major models of the genetic code origin and evolution (about these models see, e.g., Koonin & Novozhilov, 2009, IUBMB Life). This class was written specifically to perform statistical test for the paper Makukov & shCherbak (2017), but it might be used for a wider class of studies related to the genetic code. By default, the class "GeneticCode" generates...
    Downloads: 0 This Week
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  • 8
    ESTReMo

    ESTReMo

    An evolutionary simulator of transcription regulatory networks

    ESTReMo is a genetic algorithm-based simulator to explore the evolution of transcription factors and their binding motifs on realistic genomic backgrounds.
    Downloads: 0 This Week
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  • 9

    virtualbelgium

    parallelized micro-simulation of large population

    The VirtualBelgium project aims at developing understanding of the evolution of the Belgian population using simulation and considers various aspects of this evolution (demographics, residential choice, activity patterns, mobility, ...). It is based on a validated synthetic population for the country and is intrinsically multi-disciplinary.
    Downloads: 0 This Week
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  • 10

    XNDiff

    X-ray and Neutron powder pattern simulation analysis

    Keywords (XNDiff): -SAXS -SANS -absolute units -core (double)shell crystalline nanoparticles -with a parallelepidal shape -particle assemblies -powder and ensemble average -C/C++ -Unix -OpenMP -HPC Cluster Keywords (BatchMultiFit): -simultaneous fits for several SAXS and SANS curves with simulation data from XNDiff -SANS data can be smeared with dq values from experimental data sets or analytical functions -Mathematica console -local and global optimizers (simulated annealing, differential evolution, Nelder-Mead, ...) can be used -range for fit parameters and further constraints between fit parameters -parallelized (typ. 4-8 threads) TODO (BatchMultiFit): -read and use errorbars from experimental data sets -allow different q-ranges for different data sets in the fits -rewrite and test in Python using e.g. the lmfit module: https://pypi.python.org/pypi/lmfit/ to get rid of Mathematica and to run it on HPC clusters
    Downloads: 0 This Week
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  • 11

    pridil

    Prisoners' dilemma evolution simulator

    Evolution simulator based on the prisoners' dilemma.
    Downloads: 0 This Week
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  • 12
    Evoversum
    This project has been moved to https://bitbucket.org/pbazant/evoversum/src/master/ . Evoversum is a fast Darwinian evolution simulator. The program simulates a 2D world populated with "animals" which struggle for food, reproduce and may also eat each other. The subject of evolution is their behavior, which may become quite complex. There is an updated video tutorial at http://www.youtube.com/watch?v=nPkZvyVDWJU !
    Downloads: 0 This Week
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  • 13
    Penacho

    Penacho

    Smokestack pollutant dispersion simulator

    Penacho calculates and draws the gas dispersion of a smokestack in the atmosphere. The plume evolution and the pollutant concentration distribution over the surrounding area can be seen in an interactive 3D graph.
    Downloads: 0 This Week
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  • 14
    The goal of this project is to provide a platform for simulating biological aging and evolution of the population. The simulation is done using Penna bit-string model. Its based on the mutation accumulation theory.
    Downloads: 0 This Week
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  • 15
    The Mars Rover Simulator project is based on the evolutionary robotics paradigm where an artificial agent acquires its skills through the process of artificial evolution. This simulator can be useful to evolve neural network controllers for the rover
    Downloads: 10 This Week
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  • 16
    Morphid Academy is a virtual laboratory primarily for the study of evolution of physically simulated forms and their functions.
    Downloads: 0 This Week
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  • 17
    Ouroborus is an artificial life framework for mobile agents on a background of cellular automata. It can be used to teach and research topics such as population genetics, ecology and evolution. The demo includes a curses view and live Csound audio.
    Downloads: 0 This Week
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  • 18
    Simulation-System for cell-evolution according to Darwin's theories. The system consists of a server, simulation-units and several clients. The simulation can be computed by many computers simultaneously.
    Downloads: 0 This Week
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  • 19
    Trelis is a graphical Monte Carlo simulation tool for modeling the time evolution of chemical reaction systems involving small numbers of reactant molecules, such as occur in subcellular biological processes like genetic regulatory networks.
    Downloads: 0 This Week
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  • 20
    altruism xenophobia and evolution of cooperation in human beings
    Downloads: 0 This Week
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  • 21
    A 3D physics-simulated world, populated by autonomous creatures who reproduce and evolve over time in order to become best adapted user-defined environmental conditions. Currently in the planning stage; A more detailed description is in the forums.
    Downloads: 0 This Week
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