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EurekaOptima is a framework for optimization containing the implementation of several algorithms like Genetic Algorithm (GA), Clonal Selection Algorithm (CLONALG), Grammatical Evolution (GE), DifferentialEvolution (DE), and Evolution Strategy (ES).
X-ray and Neutron powder pattern simulation analysis
Keywords (XNDiff):
-SAXS
-SANS
-absolute units
-core (double)shell crystalline nanoparticles -with a parallelepidal shape
-particle assemblies
-powder and ensemble average
-C/C++
-Unix
-OpenMP
-HPC Cluster
Keywords (BatchMultiFit):
-simultaneous fits for several SAXS and SANS curves with simulation data from XNDiff
-SANS data can be smeared with dq values from experimental data sets or analytical functions
-Mathematica console
-local and global optimizers (simulated annealing, differentialevolution, Nelder-Mead, ...) can be used
-range for fit parameters and further constraints between fit parameters
-parallelized (typ. 4-8 threads)
TODO (BatchMultiFit):
-read and use errorbars from experimental data sets
-allow different q-ranges for different data sets in the fits
-rewrite and test in Python using e.g. the lmfit module:
https://pypi.python.org/pypi/lmfit/
to get rid of Mathematica and to run it on HPC clusters
AEON is an Evolutionary Computation framework written in C++.
...AEON can be easily configured using text files to use different encodings and/or EAs on the same experiment.
The framework currently supports standard EAs (Simple GA, Steady-State GA, etc.), DifferentialEvolution and a number of direct and indirect encodings (bitstring, real-valued, AGE, etc.).