Search Results for "sed"

...It comes with a large number of modules, encompassing the whole modeling cycle: creating computational models, simulating and analyzing them, visualizing the information, in order to improve the models. All using community standards, such as SED-ML, SBML and MIRIAM.

This project hosts a library and tools for sharing simulation experiments encoded using SED-ML.

PySCeS CBMPy is a new platform for constraint based modelling and analysis. It has been designed using principles developed in the PySCeS simulation software project: usability, flexibility and accessibility. CBMPy supports the latest standards for encoding CBM models encoding, SBML L3 FBC, COBRA as well as MIRIAM compliant RDF and custom annotations. Its architecture is both extensible and flexible using data structures that are intuitive to the biologist while transparently...

...<word> ::= <alph>+ bnf2xml is a top down recursive parser. Unlike buttom up parsers like gcc(1) or some top downs, bnf2xml is completely unambiguous / resolves ALL conflicts. Slower on ave. for parsing C or than sed(1) for simple searches. Far easier than using flex/C to create a parser. caveate: I do not suggest it's worth while to make a new gcc(1) using bnf2xml. bnf2xml an nth BETA release, but no complains yet.

This project has migrated to GitHub (https://github.com/flintproject/clibsedml).

XPSEDAPI is a cross-platform (programming language agnostic) definition of an application programming interface for working with and manipulating SED-ML documents. Interfaces are defined in Interface Definition Language (IDL) with full documentation.