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...The central anchor for the data congregation is the modificationSpecificPeptides.txt or diann-output.pr_matrix.tsv file - additional data is inferred from different other source files from the corresponding folder. Maybe also useful for normal proteomics purposes but this script is heavily optimized for protein neo-termini identification and validation. A graphical interface is available as Yoğurtlu_MANTI (a Perl/Tk script) + execut. application versions for Win1x without the need to have Perl installed locally.
For a very detailed explanation of script parameters and the evaluation strategy, please consult the extensive manual PDF
Simple Gnuplot automation and plot conversion tool.
Autoplot is a simple Perlscript to plot Gnuplot files with simple dependency checking and conversion of the plots to different formats using rsvg-convert. The Gnuplot scripts must plot to a SVG terminal and output the result to STDOUT for the script to work as intended.
The script reads all .gnuplot files in the working directory and creates SVG plots from them in svg subdirectory.
...Maybe also useful for normal proteomics purposes but this script is heavily optimized for protein neo-termini identification and validation.
For a more thorough explanation of script parameters and evaluation strategy, please consult the extensive manual PDF.
Print the English name of a number of any size. Number can be run on the command line, or as a CGI script. Number prints names in both the American and European naming system. Number can also print the decimal expansion of a number.
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CPU Balance is a Perlscript to balance the CPU usage among users. It will allocate CPU resource to each user equally only by the command renice, no matter how many processes/threads a user runs.
################
# Basic Renice Goal
################
1. User-based balance: every user get the same cpu percentage if they ask for more;
2. all the jobs of one user has the same NI;
3.
Scripts for parsing and general use in Computer Forensics - Octane Lab
...Byte Investigator
The Byte Investigator project from Octane Labs was born in order to be a parsing toolkit for several Windows structures (files and file system structures). These Perlscript tools are useful tools for Computer Forensics professionals and Information Security researchers.
t2prhd is a Perlscript which generates simple diagrams that highlight relationships of sequence repeats detected by using a profile HMM in two sequences. Homology relations are identified on the basis of the phylogeny of repeats.
Based on the Buckwalter Morphological Analyzer (Version 1.0) for doing Arabic stemming and POS tagging. Includes a rewrite of the original Perlscript, with better documentation and more flexible options, and a C++ interface (usable as a library or app).
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The Simple, Scalable, Script-based Science Processor for Measurements (S4PM) is a system for highly automated processing of science data, scalable up to large processing systems and scalable down to small, special-purpose processing strings.
unPIC is a Perlscript that disassembles Microchip microcontroller's HEX files. This is a powerful tool for all reverse engeneers that creates a well understandable assembly source from a binary file. Creates xrefs, labels, subroutines and much more...
A command line script to integrate the Weatherhawk Personal Weatherstation into the Nagios NMS framework. The script can also be used from the command line to retrieve data. Values can be stored into a RRD database for future reference.
The Scenario Data Selector is a Perlscript that serves up scenario data on the web. Users can browse data and choose to show by value or as growth rates or indices. Data can be shown by region or indicator - the script takes care of regional aggrega
Plotamber is a Perlscript for an easy and automated plotting of properties derived from molecular dynamics or minimization calculations done with Amber, NAMD or Charmm.
RSMeter is a package for interfacing to the RadioShack/Metex 22-168A series of serial-connected multimeters. Currently, it includes an ncurses interface and a script to graph readings. Support for other meters is planned in the future, with an API.
wfb2sql is a Perlscript that extracts information from the CIA World Factbook and creates SQL statements for IBM DB/2, PostgreSQL or MySQL. This data builds a perfect database for learning and teaching SQL.
For interactive clustering and visualization, Cluster and TreeView by Mike Eisen are great. XCluster by Gavin Sherlock solves the problem of clustering large numbers of files. Now slcview allows you to script generation of cluster and tree images.
Bobware tool suite is a set of small EDA tools which are useful in the design of integrated circuits. The suite contains a perl/tk script for region planning large ASICs (application specific integrated circuits.)
This very simple perlscript parses you iptables log files and produces a report in text format with a summary based on the prefix of the log ( --log-prefix option of iptables ).
Prefix description is allowed.
A Perl CGI script which calculates a matrix of loan payments in a table for the purpose of determining which interest rate and term will best fit a buyer's needs. Working on linking the payment values to a ammort schedule.