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Java class libraries for structural biology development: includes protein formatconversiontool, printf-based text formatting, Pred2ary secondary structure prediction, neural net library, Hooke-Jeeves global optimizer, and misc. math & statistics.
The goal of the OSM2PostGIS project is to develop an OpenStreetMap data processor that can import any amount of .osm XML data into a PostGIS database, and produce evaluated navigation network topologies to support routing.
The Genomic Diversity and Phenotype Connection (GDPC) written in JAVA uses web services to make XML formatted data publicly available. The GDPC Browser (front-end GUI) can access these services, and other applications can use the API.