35 projects for "inference" with 2 filters applied:

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  • 1
    CausalImpact

    CausalImpact

    An R package for causal inference in time series

    The CausalImpact repository houses an R package that implements causal inference in time series using Bayesian structural time series models. Its goal is to estimate the effect of an intervention (e.g. a marketing campaign, policy change) on a time series outcome by predicting what would have happened in a counterfactual “no intervention” world. The package requires as input a response time series plus one or more control (covariate) time series that are assumed unaffected by the intervention, and it divides the time horizon into “pre-intervention” and “post-intervention” periods. ...
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  • 2
    JSON to Go

    JSON to Go

    Translates JSON into a Go type in your browser instantly (original)

    JSON to Go is a browser-based developer tool that converts JSON samples into Go struct definitions. It is designed to save Go developers time when working with APIs, configuration files, or external JSON payloads. Users paste JSON into the tool, and it generates a matching Go type that can be copied into a project. The tool makes reasonable assumptions about field names, types, nested objects, arrays, and struct tags, but it still expects users to review the output before using it in...
    Downloads: 0 This Week
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  • 3
    UnBBayes

    UnBBayes

    Framework & GUI for Bayes Nets and other probabilistic models.

    UnBBayes is a probabilistic network framework written in Java. It has both a GUI and an API with inference, sampling, learning and evaluation. It supports Bayesian networks, influence diagrams, MSBN, OOBN, HBN, MEBN/PR-OWL, PRM, structure, parameter and incremental learning. Please, visit our wiki (https://sourceforge.net/p/unbbayes/wiki/Home/) for more information. Check out the license section (https://sourceforge.net/p/unbbayes/wiki/License/) for our licensing policy.
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    Downloads: 8 This Week
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  • 4
    SPINA

    SPINA

    Structure parameter inference approach for endocrine feedback control

    SPINA is software for the rapid, reliable and accurate determination of constant structure parameters of endocrine feedback control systems. It is a class of static function tests that require nothing more than steady-state concentrations of hormones or metabolites obtained in vivo. The first version of this cybernetic approach had been developed for the evaluation of the functional status of the thyroid gland, i.e. thyroid's secretory capacity (gain of thyroid, GT or SPINA-GT) and sum...
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    Downloads: 9 This Week
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    Build Securely on AWS with Proven Frameworks

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  • 5
    TorchQuantum

    TorchQuantum

    A PyTorch-based framework for Quantum Classical Simulation

    A PyTorch-based framework for Quantum Classical Simulation, Quantum Machine Learning, Quantum Neural Networks, Parameterized Quantum Circuits with support for easy deployments on real quantum computers. Researchers on quantum algorithm design, parameterized quantum circuit training, quantum optimal control, quantum machine learning, and quantum neural networks. Dynamic computation graph, automatic gradient computation, fast GPU support, batch model terrorized processing.
    Downloads: 2 This Week
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  • 6
    This library is aimed at C++ developpers who need to add fuzzy logic to their app. It also provides simple applications to learn rules from data, and to process data. For screenshots, see website.
    Downloads: 0 This Week
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  • 7
    QUASI is a toolkit to rapidly assess the quality of shRNA-Seq based data and call differential abundance using common statistical inference methods (DESeq, edgeR, baySeq).
    Downloads: 0 This Week
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  • 8
    A python framework for fuzzy inference computations
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  • 9

    nail_systems_biology

    NAIL is a toolset for network analysis in the life sciences

    The NAIL (Network Analysis and Inference Library) project is a set of tools for solving problems in the life sciences using network (graph) approaches. NAIL includes methods for creating networks, analysing and comparing networks, and for visualising or presenting the results. These methods are designed as self-contained platform-independent components which can be called either from another program, or from a command line.
    Downloads: 1 This Week
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  • 10
    msBayes allows complex and flexible phylogeographic inference. More specifically, you can test the simultaneous divergence (TSD) of multiple population (species) pairs. It uses approximate Bayesian computation (ABC) under a hierarchical model.
    Downloads: 0 This Week
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  • 11
    IRIS is an extensible reasoning engine for Datalog extended with function symbols, unsafe rules, negation, locally stratified or non-stratified programs, XML schema data types and a comprehensive and extensible set of built-in predicates.
    Downloads: 0 This Week
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  • 12
    GeneNetWeaver
    GeneNetWeaver (GNW) is an open-source tool for in silico benchmark generation and performance profiling of network inference methods. GNW was used to generate the community-wide DREAM3, DREAM4 and DREAM5 In Silico Challenges.
    Downloads: 3 This Week
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  • 13
    Javamony

    Javamony

    A Student's Approach to the Phylogenetic Problem

    ...Javamony is invoked as follows: java -jar Javamony.jar [input.fasta] [random / stepwise (starting tree)] [# of bootstraps] [outgroup taxon #1] [outgroup taxon #2] ... Not meant as a competitive phylogenetic inference program, Javamony is an opportunity for me to acquire the Java language while learning to address and solve fundamental problems in phylogenetics. Therefore, for my own educational benefit, all code is original. Of course, there are probably a good deal of mistakes as well. I distribute Javamony, as I did Pysimony, hoping that it will be of educational value to someone else or at least vaguely amusing. ...
    Downloads: 0 This Week
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  • 14

    Pysimony

    A Pythonic Implementation of Parsimony Inference of Phylogeny

    UPDATE: After some bug fixes, I've ditched Pysimony for Javamony: https://sourceforge.net/projects/javamony/ Given Python's beauty, I know that someday I will have to finish Pysimony. A student's first attempt at a phylogenetic inference program, written in the simplistic yet elegant Python. Pysimony reads a FASTA file (only ATGC accepted) specified as its only argument. Basic testing has shown that it is slow, inaccurate and most definitely inefficient. An unlikely-to-be-the-most-parsimonious tree is printed upon completion in basic Newick tree format. As all parts of the program are the original work of a beginner programmer, this may represent one of the worst approaches to solving the phylogenetic problem. ...
    Downloads: 0 This Week
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  • 15
    The Automated Parameter Estimation and Model Selection Toolkit is a fast, parallelized MCMC engine written in C for Bayesian inference (parameter estimation and model selection).
    Downloads: 1 This Week
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  • 16
    Software for making Clusters of Orthologous Groups (featuring the new EdgeSearch algorithm). Latest ref: Kristensen DM, Kannan L, Coleman MK, Wolf YI, Sorokin A, Koonin EV, Mushegian A. Bioinformatics 2010.
    Downloads: 0 This Week
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  • 17
    Alchemy is a software package providing a series of algorithms for statistical relational learning and probabilistic logic inference, based on the Markov logic representation.
    Downloads: 0 This Week
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  • 18
    Open Bayes is a python free/open library that allows users to easily create a bayesian network and perform inference/learning on it. It is mainly inspired from the Bayes Net Toolbox (BNT) but uses python as a base language. www.openbayes.org
    Downloads: 0 This Week
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  • 19
    This is a wxWidgets-based, cross-platform graphical frontend for the maximum-likelihood phylogenetic inference program RAxML created by Alexis Stamatakis (A. Stamatakis, Bioinformatics 22(21):2688-2690, 2006)
    Downloads: 0 This Week
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  • 20
    Given low-density genotypes for pedigrees, and dense genotypes for some people in those pedigrees, computes high-density genotypes for some other people in those pedigrees. This reduces genotyping effort.
    Downloads: 0 This Week
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  • 21
    Earnest is a A PHP-MYSQL AI EXPERT SYSTEM for creating powerful expert system easily. Its simple PHP API can also be called from JAVA, browsers or other software to perform GIS and other comparisons. Also has ability to create XML results.
    Downloads: 0 This Week
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  • 22
    A Java Implementation of Latent Dirichlet Allocation (LDA) using Gibbs Sampling for Parameter Estimation and Inference
    Downloads: 0 This Week
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  • 23
    Java Expert Rule Based Inference Language. Jerbil is an open source rule processing engine written in Java. Currently Jerbil supports a full set of processing functions with text-based and XML interfaces; a Java interface is planned.
    Downloads: 0 This Week
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  • 24
    Genetic programming environment to inference context free grammars base on positive and negative examples of language.
    Downloads: 0 This Week
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  • 25
    This is a Python package for general Bayesian inference.
    Downloads: 0 This Week
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