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The BioArray Software Environment (BASE) v1.2 is a comprehensive free web-based database solution for the massive amounts of data generated by microarray analysis. PrognoChip-BASE extends BASE v1.2.16, providing more functionalities.
Similarity Evaluator is a tool to analyse similarity function implementations and algorithms, where is possible to compare several APIs on performance, best result, similarity and discernability values.
Omnigraphs are a formal extension of hypergraphs with the ability of edges to connect to multiple nodes and edges. This project hosts the Ogre compilers.
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JavArch is a simple gate-level and above simulator. It is written in Java so it is portable and uses Java's builtin event-driven mechanisms to reflect how electronics actually work.
WGAViewer is a suite of JAVA software tools that provides a user-friendly interface to annotate, visualize, and help interpret the full set of P values emerging from a whole genome association (WGA) study.
HDLObf is intended to be a HDL Obfuscator and identifier name change utility. Primarily designed for Verilog/SystemVerilog support will be added for VHDL/SystemC in future.
Crow - Computational Representation Of Whatever. A platform for the integration and mining of complex and distributed data. Represents cross-linked semantic web documents as a network of software objects and offers easy ways to filter, and sort them.
Complete technical analysis & trading system, full set of features: retrieve, analyze EOD stocks data; manage multiple portfolios; technical analysis & graphical rendering; neural networks for generation of trading signals; support trader community
A Java-written MIPS simulator developed to stimulate people learning the Assembly language. It adds graphics, sounds and user interation to make writing assembly programs more interesting.
OntMT is an implementation of the ontology-based model transformation approach. Its target audience are scientists and researchers who want to experiment with automated generation of QVT model transformations. The implementation is based on Eclipse.
Adamant is a java application for annotation of microarray array designs. The software enables MIAME-compliant annotation of sequences spotted onto arrays and can produce output files in MAGE-ML and other data formats used by public microarray data repos
This project about providing run-time support for developing Decentralized Autonomic Computing systems (Eclipse Innovation Grand). Currently the project contains a automatic guided vehicle (AGV) simulator and an editor and visualisation as eclipse plugin
Baldr, aka Balder, is a plagiarism prevention software. Inspired by late researches in computer sciences, it’s able to compare documents using only properties linked to data compression.
CollOPort provides a web-based portal for a group of researchers to use to collaboratively manage an observatory or experiment. It consists of several components, including topic-based collaborative content, discussions, proposals, and voting.
The goal of the Ibis project at the Vrije Universiteit Amsterdam is to provide an efficient and flexible Java-based programming environment for Grid computing.
Ibis provides several communication models, including a highly efficient RMI implementation.
febrl-gen is a Java-based frontend to Febrl, an open-source data linkage system written in Python. Users can configure the parameters of a linkage project through the frontend, and febrl-gen will generate a Febrl-ready configuration file.
NOTE: The IntAct package is now hosted at google code: http://intact.googlecode.com IntAct is an open source package to store and manipulate molecular interaction data.