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This software computes likelihoods for infinitely-many-sites sequence data under multiple merger coalescents. The likelihood can be computed exactly or approximated via importance sampling.
Library and tools for storing and retrieving arbitrary metadata
FoxHive is a general purpose cross-platform library and utilities for storing and retrieving semantic meta-data associated with files. Where metadata is stored in: a special directory, extended file attributes, embedded e.g. XMP, nepomuk or xesam.
CORPSE (CORPus SEarch) is a powerful search engine written in Java. The aim is to provide an efficient implementation of a word level inverted index search with various cool functions that can be used on very large corpora.
ChronoSVG generates a timing diagram, as used in electrical devices documentations, from a simple and intuitive ASCII source file. The output file is in SVG format, and makes use of CSS to defer the styling details to presentation time.
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Netkit is a network emulation environment that allows the user to set up complex scenarios on a single PC with little effort and at no cost. In itself, Netkit aims at integrating different other open source products to provide an easy-to-use interface.
xswifs stands for: cross SoftWare Interfaces.
This project provide examples (snippets) for interfacing various software tools and languages with various mechanism. It has been created to help in HW/SW co-simulation and to provide benchmarks.
Cca-forum unifies the Common Component Architecture tools and tutorial. It includes the CCA specifications, the Ccaffeine framework for HPC, and related tools. These support multilanguage scientific and parallel computing.
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Artificial life simulation where computer programs (virtual organisms or VOs for short) compete on a grid for computer time. May the most intelligent VO win!
This is a set of scripts that helps with processing of NMR pH titration data. These scripts allow for fitting (using R) and plotting of data of multiple residues. The program needs to be made more user friendly.
Adaptive Wavelet Applications on general domains - the goal still far away. But the first step is done. This project aims at introducing wavelet methods realized in C++. As building block it uses FLENS.
This is a multi-threaded Java program that tries to maximise CPU utilization by separating and distributing the computational part of the work from the file reading and writing part by using separate threads.
Liegkat-Archiv delivers ALK converters for spatial data formats (EDBS, BGRUND, SQD, DFK, HK) and coordinate systems used in German cadastral agencies before ALKIS into KML and JML. It delivers Python packages and XSL files.
My personal computing suite provides some programs I developed as a hobbyist and currently include a lambda calculus interpreter and a calculator which solves arithmetic expressions; both are written in C++.
BLOSpectrum tools provide programs to automatically classify proteins according to SCOP database. In order to achieve such a goal, they implements all the required information theory widgets on BLOSpectrum fingerprints.
This is a program for numerical solution of Euler equations of compressible flows using discontinuous galerkin method. The code is written on top of the deal.II finite element library.
Code has been moved to
https://github.com/cpraveen/dflo
Parsers for biological data based on scanner generators like Flex (C), Re2c(C), Jflex (Java) and Ifickle (Tcl). This scanner generators are providing easier maintainance, development and higher speed than hand written scanners. Scanner output is SQL.
fktorrent is short for "fake torrent". It is a client for the BitTorrent network, which does not send and discards any received data. Otherwise, it behaves like an ordinary BitTorrent client.