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Alignment editor and multiplex pyrosequencing assay designer
Molecular-based diagnostic assays are the gold standard for infectious diseases today, since they allow a rapid and sensitive identification and typing of various pathogens. While PCR can be designed to be specific for a certain pathogen, a subsequent sequence analysis is frequently required for confirmation or typing. The design of appropriate PCR-based assays is a complex task, especially when conserved discriminating polymorphisms are rare or if the number of types which need to be...
PTools is a set of useful tools written in Pascal. It includes: scientific calculator, archiver, text editor, remote adminitration and more. It is designed to be portable across operating systems, specially Java-based mobiles, Windows and Unixes.
GpsPrune is a java application to view and manage coordinate data, eg from GPS units. With it you can load a variety of text and Xml formats, view the data (in 2d and 3d), edit and convert the data, correlate photos and audio, create charts and more.
The Unified Modeling Language (UML) is used for designing software. ArgoUML is an open source UML editor. This plugin integrates the "Context-Based Constraint Language (CCL) for Components" into ArgoUML. On Berlios we speak german - check www.cocons.or
Transform your applications and workflows into powerful agentic systems at global scale.
Gemini Enterprise Agent Platform lets you rapidly build, scale, govern and optimize production-ready agents grounded in your organization's data. The platform enables developers to build custom or pre-built agents for virtually any use case. New customers get $300 in free credits.
A platform for modelling influenza-like epidemics and containment
The Global Epidemic Simulator is a platform for modelling directly transmissible human diseases such as influenza, and testing intervention policies that may reduce the duration or severity of an outbreak of such a disease. Building on previous work, this model is spatial and individual-based, using various geographical and demographic data sources to place households at absolute locations, populated with individuals of specific ages who each attend schools or workplaces situated in their...
Tunelator processes tunnel profile data for surveying work. It provides a powerfull grid editor, 3D preview, export to Prowin, Ispol, MDT and DXF (2D and 3D views with convenient layering).
VisualSNI/VisualSEF is a graphical editor for modeling the SNI diagrams of the MACAO methodology. SNI models users interfaces independently of any HCI technology. VisualSEF fits SNI to a specific model (SEF, SEP, SEA). See http://www.jbcc.fr for more
CD++Builder is an Eclipse plug-in that integrates varied applications and utilities that aids in creating CD++ DEVS models, simulating and analyzing results. Among these applications, CD++Modeler provides a graphical editor for coupled and DEVS-Graph
TextMarker is now developed and hosted at Apache UIMA (http://uima.apache.org/textmarker.html). TextMarker is a UIMA-based tool for information extraction and more. The full featured editor of the rule language and the build process of UIMA descriptors are complemented with components for visualization, explanation, testing and rule learning.
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Editor for formal grammars. Attempts to be universal – customizable for any grammatical formalism and any syntax. Provides features such as syntax checking and highlighting, transformations (refactoring) and advanced rule editor.
Cloe (Closure Editor) is a graphical, Java based tool used for editing contigs, resolving contig features, and closing both sequencing and physical gaps.
DTMF detector library and/or application that reads in the specified audio file and returns/outputs whether DTMF detected and/or list of detected digits. May have GUI and command line interfaces.
The MIG Editor is a geographical metadata editor that implements a subset of the 19115, 19119 and 19139 ISO formats. Based in the Portuguese Metadata Profile and INSPIRE requirements.
DragMath is a drag and drop equation editor in the form of a Java applet. Once an expression is created the user can convert it into a variety of different linear syntax for mathematics, including MathML, LaTeX, Maple, Maxima or any user defined style.
PLEASE NOTE: active code development has moved to GitHub.
https://github.com/maths/dragmath
Scalable Language API (SLAPI) The most comprehensive architecture for conversational natural-language applications including speech recognition/synthesis, semantics, & machine translation. Used on Android & other mobile app platforms.
PORIS toolkit allows describing graph-based systems and their behavior in a snapshot. It provides a web
editor for a domain visual specific language (DSL) and transformation tools to generate software prototypes, system configurations, ...
Skatta - A Multiplatform System for the Design and Running of Audio and Visual Perception Tests. Skatta allows many different kinds of tests concerning the perception of audio and visual stimuli to be designed and run.
Automata Based Programming Tool for implementing logic for J2SE, J2EE and Sybmian applications. Consists of Java FSM Framework and Eclipse Plugin parts. Plugin implements UML model editor, visual debugger, validator, compiler and interpreter for Eclipse
DawNLITE is a Natural-Language-based Image Transmoding Engine. The software transforms an image to a video as recorded by a virtual camera panning and zooming over the image, following a natural language text description of the image.
powerPlant is a plant modelling tool based on parametric plant descriptions, producing highly detailed models that can be exported to 3ds. Deriving similar plants is a matter of 1 click! Complete scenes can be composited with the integrated scene editor.