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mesoFON is an individual-based mangrove forest model, a KiWi extension
mesoFON is an individual-based mangrove forest model. It is a Java implementation of the KiWi model done with RePast Simphony. It contains several new features: (1) You can add up to 10 species via the GUI. However, in principle, the number of species to be included programmatically is unlimited. (2) You can use a variety of growth functions via typing them in as a string on the GUI. (3) The model is transparent, sinc it comes with the Eclipse workbench of RePast.
Open RVC-CAL to HDL (ORC2HDL) is an Eclipse Plugin which uses the Open RVC-CAL Compiler (ORCC) and the openForge HDL Synthesizer. This plugin gives the ability to generate HDL code from a RVC-CAL model.
Moon calendar: shows moon's phase, signs and relatives plant's part
MoonPlanner is a Java calendar that allow to view moon's phases, moon's signs (constellations in which the moon is), and show the part of the plant corresponding to each sign (flower, fruit, leaf or root). For every calendar's day the user can attach notes (that are stored in a persistent database). At the startup the program will remind you if there will be notes for current day.
MetaMaster is a Java-based desktop application for defining, managing and manipulating metadata associated with a collection of data files or datasets (both locally and on the network) which are bundled together into "data packages". ANDS-funded
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CD++Builder is an Eclipse plug-in that integrates varied applications and utilities that aids in creating CD++ DEVS models, simulating and analyzing results. Among these applications, CD++Modeler provides a graphical editor for coupled and DEVS-Graph
GeoMondrian is a "spatially-enabled" version of Mondrian. GeoMondrian brings to the Mondrian OLAP server what PostGIS brings to the PostgreSQL DBMS, i.e. a consistent and powerful support for geospatial data. It also provides geo-extensions to MDX.
ELIA(Eyegaze Language Integration Analysis) supports the analysis of eye-tracking data for studies in language processing. ELIA eases early analysis of data to enable iterative development of experiments in response to spoken language.
TextMarker is now developed and hosted at Apache UIMA (http://uima.apache.org/textmarker.html). TextMarker is a UIMA-based tool for information extraction and more. The full featured editor of the rule language and the build process of UIMA descriptors are complemented with components for visualization, explanation, testing and rule learning.
Atomic Transformation Code is an EPL-licensed low-level model transformation language implemented upon the Eclipse EMF project. It is an intermediate layer created with the goal of executing any model transformation language, such as QVT, or RubyTL.
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A framework and runtime environment for exploring agent-based models designed to support the definition of models using an expressive, high-level and extensible Java API and to support the exploration of these models in both interactive and batch mod
Its an Eclipse 3.5 Plugin.
It can be used to find linear paths for unit testing of any method.
The linear path covers all the child methods and till leaf level of the hierarchy.
The packages which should be covered in the path can be controlled.
TagSEA is a framework for tagging locations of interest within Eclipse. Visit our project page for more information - including downloads and documentation: tagsea.sourceforge.net
Anna is lightweight Java framework to build pipeline systems of any kind.
It will take care of recurrent needs such as dependency management, data serialisation and synchronization as well as parallelization of execution.
Real time micro benchmark multi-lingual suite (RTMB) provides a good way to measure the deterministic quality of hardware, an operating system, or a Java Virtual Machine. RTMB consists of benchmarks in C, C++ and Java
Cyberinfrastructure Shell (CIShell) is an open source, community-driven framework/application for the integration and utilization of datasets, algorithms, tools, and computing resources. Algorithms can be integrated using most programming languages.
D-finder is a bioinformatic search algorithm for the identification of D-sites in JNK interacting proteins. The algorithm is a combination of pattern matching and a hidden markov model (HMM) based on a training set of known JNK D-sites.
Automata Based Programming Tool for implementing logic for J2SE, J2EE and Sybmian applications. Consists of Java FSM Framework and Eclipse Plugin parts. Plugin implements UML model editor, visual debugger, validator, compiler and interpreter for Eclipse
Currently, all existing formal tools are designed to serve as formal verifiers, using one implementation or another. JTLV is a new tool aimed to facilitate and provide a unified framework to the development of formal verification algorithms.
AnnaF is an automatic gene annotation framework, that is used to do some automatic annotation for C. higginsianum. It was also tested on F. graminearum and should work well for fungi in general.
AnnaF was build upon the pipeline framework Anna.