1524 projects for "linux command" with 2 filters applied:

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  • 1
    Ns is a discrete event simulator targeted at networking research. Ns provides substantial support for simulation of TCP, routing, and multicast protocols over wired and wireless (local and satellite) networks.
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    Downloads: 540 This Week
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  • 2
    Alignment of the assembled sequences to a reference genome is a common way to obtain a likely order for the contigs, though most of times the final decision is taken by the user. We present the jContigSort, a tool that sorts the genome contigs.
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  • 3
    Software for parsimony-based tree fitting, which can be used for analysis of problems in historical biogeography, coevolution, and in species tree - gene tree fitting.
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  • 4
    A fast efficient way of dealing with large amounts of Blast or Repeatmasker data.
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  • 5
    GCX provides a complete set of data-reduction functions for CCD photometry, accessible both from a GUI and the command line. It also controls CCD cameras and telescopes, and implements automatic observation scripting.
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  • 6
    spinney
    SPINNEY provides an implementation of helicity spinors and related algorithms for the symbolical manipulation program FORM. The description of this package is published in http://arxiv.org/abs/1008.0803 .
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  • 7
    Amalthea is a collection of scripts (mainly Python, glued with Bash scripts) for *nix systems that helps to simultaneously collect information from multiple laboratory balances oriented to gravimetric measurement of plant transpiration.
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  • 8
    SimBac is a software package for simulating bacterial genome evolution. It outputs samples of DNA sequences at each generation & allows testing of major evolutionary mechanisms, including mutation, recombination, genetic drift, and natural selection.
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  • 9
    BpMatch is an algorithm that, given 2 strings S and T, compute the maximum coverage of T using only subequence or reversed complemented subsequences of S, of minimum length l.
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  • 10
    OrthoInspector is a new software system for orthology/paralogy analysis. Its purpose is to facilitate the installation and the maintenance of a database describing orthology/inparalogy relations and to provide tools to exploit these data.
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  • 11
    pyLego
    Differential-algebraic simulator in python. Process and control systems are modelled w/ bloc diagrams. It allows algebraic loops, has an automatic steady-state computation, detects singular systems, and uses variable time-step transient integration.
    Downloads: 0 This Week
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  • 12
    Shrec is a bioinformatics tool for error correction of HTS read data.
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  • 13
    Graph-based Extraction and Summarization - a generic graph-based summarization framework. Basic functionality is provided - third-party modules can be plugged in.
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  • 14
    OpenBioGeoSim it's a open source software that simulates the stochastic origin and spread of species geographic ranges in a heterogeneous landscape. It's a free alternative based on Gary Entsminger's BioGeoSim.
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  • 15
    This project has been moved to https://github.com/loomchild/maligna . All further development will be done there.
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  • 16
    SolSNP is a Java-based DNA variant calling tool for Next-Generation Sequencing alignment data. SolSNP uses a modified Kolmogorov-Smirnov statistic and data filtering to confidently and quickly call variants on high-coverage aligned genomes.
    Downloads: 0 This Week
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  • 17
    Tidal Analysis Program in PYthon (TAPPY) uses the least squares optimization function from scipy to perform a harmonic analysis (calculate amplitude and phases of a set of sine waves) of a hourly time series of water level values.
    Downloads: 0 This Week
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  • 18
    RepMiner takes a graph theory approach to the classification and assembly of the repetitive fraction of genomic sequence data. Sequence lengths analyzed by RepMiner can range from full length transposable elements to low coverage sample sequence data.
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  • 19
    Smoldyn is a computer program for simulating reactions and diffusion at a mesoscopic size scale. This scale lies between the more traditional microscopic size scale, in which all or most atoms are considered.
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  • 20
    This software package was developed to supply a portable decoding package (written in C and callable by Fortran) compatible to some extent with ECMWF GRIBEX routine.
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  • 21
    Serbert is a command line utility which performs a Bit Error Rate Test (BERT) on serial lines for Unix and it's variants. It does this by transmitting bytes, and waiting for their uncorrupted return. Bit error rate testers are used to test and fault
    Downloads: 0 This Week
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  • 22
    HanNanum - Korean POS Tagger
    HanNanum is a Korean Morphological Analyzer and POS Tagger. A plug-in component-based architecture is adapted to the new Java version for flexible use. You can find the work flow for morphological analysis, POS tagging, noun extraction, etc. Contact: kschoi@kaist.ac.kr hjjeong@world.kaist.ac.kr
    Downloads: 0 This Week
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  • 23
    JEuclid is a complete MathML rendering solution, consisting of: a MathViewer application, command line converters from MathML to other formats, an ant task for autmated conversion, display components for AWT and Swing and a component for Apache Cocoon
    Downloads: 1 This Week
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  • 24
    The Wikipedia Miner toolkit provides simplified access to Wikipedia. This open encyclopedia represents a vast, constantly evolving multilingual database of concepts and semantic relations; a promising resource for nlp and related research.
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  • 25
    L.E.I.C.A. (Long Exposure Internet CAmera) is an application that takes input from your webcam, or v4l2 device, and makes a long-exposure image. Until now there's only a python binding for this app, soon there will be a C/C++ SDL one
    Downloads: 0 This Week
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