Showing 14 open source projects for "speed read"

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  • 1
    Armadillo

    Armadillo

    fast C++ library for linear algebra & scientific computing

    * Fast C++ library for linear algebra (matrix maths) and scientific computing * Easy to use functions and syntax, deliberately similar to Matlab / Octave * Uses template meta-programming techniques to increase efficiency * Provides user-friendly wrappers for OpenBLAS, Intel MKL, LAPACK, ATLAS, ARPACK, SuperLU and FFTW libraries * Useful for machine learning, pattern recognition, signal processing, bioinformatics, statistics, finance, etc. * Downloads:...
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    Downloads: 1,911 This Week
    Last Update:
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  • 2
    eGPXviewer

    eGPXviewer

    eGPXviewer is a 3D GPX track viewer

    eGPXviewer is a GPS track viewer capable of summarizing key data of input track GPS series, displaying the track's altitude & speed profile and provide interactive 3D perspective views of it. The GPS track data should be input from a GPX exchange formatted file which is typically obtained by downloading a GPX file from a GPS receiver/tracker (e.g. Garmin™) or an iOS™/Android™ tracker app. The GPX exchange format is a standard output file format available in most GPS tracker devices...
    Downloads: 2 This Week
    Last Update:
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  • 3
    BarraCUDA Fast Short Read Aligner
    Barracuda is a high-speed sequence aligner based on Sanger's BWA and utilizes the latest Nvidia CUDA architecture for accelerating alignments of sequence reads generated by next-generation sequencers.
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    Downloads: 1 This Week
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  • 4

    CUSHAW2: Parallel Gapped Read Alignment

    One of the leading short-/long-read aligner to large genomes

    CUSHAW2 is a fast and parallel gapped read alignment to large genomes, such as the human genome. The performance evaluation, by aligning simulated and real datasets to the human genome, shows that CUSHAW2 is consistently among the highest-ranked aligners in terms of alignment quality for both single-end and paired-end alignment, while demonstrating highly competitive speed. Furthermore, our aligner shows good parallel scalability with respect to the number of CPU threads.
    Downloads: 1 This Week
    Last Update:
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  • Find out just how much your login box can do for your customer | Auth0 Icon
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  • 5
    SOAP3-DP

    SOAP3-DP

    Fast, Accurate and Sensitive GPU-based Short Read Aligner

    Latest Code on GitHub: https://github.com/aquaskyline/SOAP3-dp SOAP3-dp, through leveraging the computational power of both CPU and GPU with optimized algorithms, delivers high speed and sensitivity simultaneously. Compared with widely adopted aligners including BWA, Bowtie2, SeqAlto, CUSHAW2, GEM and GPU-based aligners BarraCUDA and CUSHAW, SOAP3-dp was found to be two to tens of times faster, while maintaining the highest sensitivity and lowest false discovery rate (FDR) on Illumina reads...
    Downloads: 0 This Week
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  • 6
    MICA-aligner

    MICA-aligner

    Next-generation sequencing short reads aligner based on Intel® MIC

    Latest Code in GitHub: https://github.com/aquaskyline/MICA-aligner To better utilize MIC-enabled computers for NGS data analysis, we developed a new short-read aligner MICA that is optimized in view of MIC’s limitation and the extra parallelism inside each MIC core. Experiments on aligning 150bp paired-end reads show that MICA using one MIC board is ~4.85 times faster than the CPU-(multi-core)-based BWA-MEM and about the same speed as the GPU-based SOAP3-dp. Furthermore, MICA’s simplicity...
    Downloads: 0 This Week
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  • 7
    WeatherMonitoringStation

    WeatherMonitoringStation

    WeatherMonitoringStation monitors environmental data

    WeatherMonitoringStation is BeagleBone/Embedded Linux based software written in C++ intended to read, monitor, share and display environmental data such as temperature, humidity, wind speed etc. At this stage of development, temperature is measured using a DS18B20 sensor and sent out via standard output and/or a TCP/IP connection. Additional features will be implemented in due time. Recommended setup: * Eclipse with CDT. * GNU toolschain for ARM. * Oscilloscope. * Open collector buffer...
    Downloads: 0 This Week
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  • 8
    SnowMicroPyn

    SnowMicroPyn

    Python based reader for SnowMicroPen® .pnt measurements

    SnowMicroPyn is an opensource reader for SnowMicroPen® files in binary .pnt format. The reader is Python based and published as source code as well as compiled executable for Windows, Linux and Mac. The software is preliminary, thus please report bugs. For further information, please read the Readme.txt in the download section. The SnowMicroPen® (SMP) is developed by the WSL Institute for Snow and Avalanche Research, Davos. The SMP is the first high-resolution snow penetrometer...
    Downloads: 0 This Week
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  • 9

    PASHA: Parallelized Short Read Assembly

    One of the fastest parallel short read assemblers for large genomes.

    PASHA is a parallel short read assembler for large genomes using de Bruijn graphs. Taking advantage of both shared-memory multi-core CPUs and distributed-memory compute clusters, PASHA has demonstrated its potential to perform high-quality de-novo assembly of large genomes in reasonable time with modest computing resources. Our evaluation using three small real paired-end datasets shows that PASHA is able to produce better assemblies with comparable genome coverage and mis-assembly rates...
    Downloads: 0 This Week
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  • Claims Processing solution for healthcare practitioners. Icon
    Claims Processing solution for healthcare practitioners.

    Very easy to use for medical, dental and therapy offices.

    Speedy Claims became the top CMS-1500 Software by providing the best customer service imaginable to our thousands of clients all over America. Medical billing isn't the kind of thing most people get excited about - it is just a tedious task you have to do. But while it will never be a fun task, it doesn't have to be as difficult or time consumimg as it is now. With Speedy Claims CMS-1500 software you can get the job done quickly and easily, allowing you to focus on the things you love about your job, like helping patients. With a simple interface, powerful features to eliminate repetitive work, and unrivaled customer support, it's simply the best HCFA 1500 software available on the market. A powerful built-in error checking helps ensure your HCFA 1500 form is complete and correctly filled out, preventing CMS-1500 claims from being denied.
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  • 10
    KineticaRT V4

    KineticaRT V4

    Windows software for fast instrumentation and control systems

    KineticaRT allows you to build software instrumentation and control systems with fast screen updates, adaptable graphics and easy configuration. It supports simultaneous display and configuration while running. Using it, you can animate meters, gauges, trend graphs and many other items accurately and effectively. KineticaRT achieves its principal design aims of speed and usability by means of configurable display objects - inherently faster than animated user-drawn graphics. Easy to use...
    Downloads: 0 This Week
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  • 11

    GPXReport

    Analyze gpx files and store summary in Sqlite database

    There are many good programs to manage gpx tracks from my sport activities. My favorite one is gps-prune to view gps tracks on a map and make changes. However, I was missing a simple tool to store summary information about a gpx track into a database to keep track of my training efforts. That's why I created GPXReport. GPXReport is a desktop solution which is written in Java and should run on most computers. The program can read a gpx-file and calculate basics information such as: - overall...
    Downloads: 0 This Week
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  • 12
    LeseSolm
    Download GPS track from the GPS logger "Solmeta Geotagger Pro" under Linux; Auslesen des Geotaggers * Geotag images with image direction, pitch, roll; Geotagging mit Blickrichtung * Altitudes/Höhen from geonames.org * NMEA analysis: DOP, satellite
    Downloads: 0 This Week
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  • 13
    N-Sense

    N-Sense

    N-Sense Sensory substitution software

    N-Sense is sensory substitution software. Whit goal to make sensory substitution and super senses available to everyone. N-sense uses hearing as it's input port and is(will be) capable to allow multiple senses trough it as vision, magnetic orientation, humidity, velocity,time, altitude... Almost any data from computer can be made into sense and included into project. N-Sense is modular by design, written mostly in c++ to allow optimal processing speed and uses OpenCv for Image/video...
    Downloads: 0 This Week
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  • 14
    This script prints quadrature encoder wheels, with an index, it can be edited to create any size wheel. This allows a computer to read the speed and direction of a rotating shaft, such as a servo motor.
    Downloads: 0 This Week
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