Showing 3 open source projects for "chrom"

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  • 1

    denovo_hit

    Outputs potential denovo variants from VCF given pedigree information.

    ...): CHROM, POS, ID, REF, ALT, QUAL, FILTER, INFO, FORMAT, SAMPLE_ID, ... Format pedigree file (tab delimited): SAMPLE_ID_CHILD, SAMPLE_ID_PARENT1, SAMPLE_ID_PARENT2 Output file format (tab delimited): CHROM, POS, ID, REF, ALT, QUAL, FILTER, INFO, PEDIGREE, CALL_STATS, COUNTS ...
    Downloads: 0 This Week
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  • 2
    GenomeRunner

    GenomeRunner

    Annotation and enrichment of Next-Gen sequencing data

    ... (tab-delimited text file with chrom, chromStart, chromEnd). Annotation analysis output - detailed annotation of each genomic region in input data. Used to prioritize individual genomic regions by the total number of epigenomic features they co-localize with. Enrichment analysis output - p-values of statistically significant co-localizations of input genome-wide data with genome annotation features selected for the analysis. Used to prioritize epigenomic features associated with user data.
    Downloads: 0 This Week
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  • 3
    .ESA file editor (VOC71M Environnement S.A. analyzer), with comprehensive and facility improuvments.
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