Search Results for "assemblers"
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Showing 19 open source projects for "assemblers"
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ImHex
A Hex Editor for Reverse Engineers, Programmers
ImHex is a Hex Editor, a tool to display, decode and analyze binary data to reverse engineer their format, extract informations or patch values in them. What makes ImHex special is that it has many advanced features that can often only be found in paid applications. Such features are a completely custom binary template and pattern language to decode and highlight structures in the data, a graphical node-based data processor to pre-process values before they're displayed, a disassembler,... -
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Mecrisp - A family of optimising native code Forth implementations for MSP430, ARM Cortex M, RISC-V RV32IM(C), MIPS M4K and FPGAs.
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gendasm
Generic Code-Seeking Diassembler with Fuzzy-Function Analyzer
GenDasm is a Generic Code-Seeking Diassembler engine. It allows you to enter known starting vectors for a given code image for the micro. It will disassemble the code and follow through branches to assist in the separation of code and data. Its included Fuzzy Function Analyzer companion uses a DNA Sequence Alignment Algorithm to locate similar code in multiple binaries to facilitate reverse-engineering and/or code recovery. The original purpose of the Fuzzy Function Analyzer was to... -
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Programming language designed to simplify the development of small and large-scale networked applications. PROSE includes an execution engine and language that compiles into platform-independent bytecode. Bytecode can also be assembled directly.
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m6811dis
M6811 Code-Seeking Disassembler
The M6811 Code-Seeking Disassembler is a command-line tool that lets you enter known starting vectors for a given code image for the 6811 micro. It will disassemble the code and follow through branches to assist in the separation of code and data. Its companion Fuzzy Function Analyzer uses DNA Sequence Alignment Algorithms to locate similar code in multiple binaries, facilitating reverse-engineering. Originally written to analyze code from GM automotive engine controllers, but is... -
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GenSeed-HMM
Progressive assembly tool using DNA, protein or profile HMMs as seeds.
...This program depends on BLAST+ or hmmsearch and a number of third-party support tools (EMBOSS' transeq and splitter, bowtie, 454's sfffile and sffinfo). Which tools will be mandatory depends on the kind of seed and assembler used. Assemblers currently supported include CAP3, Newbler, SOAPdenovo, Velvet, and Abyss. -
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Integrated Development Environment for some microcontrollers based on 8051(e.g. AT89S8253). Supported languages are Assembly and C. It has its own simulator, assembler, editor and many other tools. See the project web site for more details and the newest updates.
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FlexxCpu
Flexible and eXpandable Cpu simulation
A small simulation of an experimental customized Cpu called FlexxCpu. A virtual Cpu whose assembly instructions have been strongly influenced by old cpus architecture (8080, 6809, z80, 68k, etc...) Please support this project by donating to this fundraiser: ------------------------------------------- Give birth to new travel bicycles!!! https://gofund.me/2201d2a4 ------------------------------------------- -
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Genobuntu
Genobuntu Package for Next Generation Sequencing
Genobuntu is a software package containing more than 70 software and packages oriented towards NGS. In its current version, Genobuntu supports pre assembly tools, genome assemblers as well as post assembly tools. Commonly used biological software and example script files for different assembly pipelines have also been provided, where the example script files can be updated to suit one’s experimental needs. Genobuntu attempts to reduce the amount of time and energy needed to build software workstations and it can also act as a good teaching source for a class room setting. ... -
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tv16k7
trace viewer and bus decoders for data captured by Agilent 16700 LA
...The tool tries to be self descriptive and get as many information as possible from HP16700 for better documenting labor: e.g. test cases, spotted issues and so on. Keywords: Linux, C, C++, Qt, Qt4, Agilent/HP 16700 logic analyzer, Bus decoders (inverse assemblers), bus probing, bus protocol analyze -
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Meta Assembler for de novo assembly results. GARM (Genome Assembly Reconciliation and Merging) is a pipeline to merge results from different assemblers or results from different DNA sequencing technologies.
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iCAS - An Illumina Clone Assembly System
An Illumina clone assembly system using SOAPdenovo and ABySS
Clone-by-clone sequencing, as a means of achieving high quality assemblies for large and complex genomes, continues to be of great relevance in the era of high throughput sequencing. However, assemblies obtained using current whole genome assemblers are often fragmented and sometimes have issues of genome completeness owing to different data characteristics introduced by multiplexed sequencing. With iCAS the data filtering process is based on a novel kmer frequency algorithm, resulting in near perfect pre-assembly reads. Contigs are generated using different assembly algorithms and then merged together to achieve longer continuity. ... -
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mitoMaker
mitoMaker - a mitochondria assembly and annotation script
mitoMaker is a pipeline script developed to simplify the assembly and automatic annotation of mitochondrial genomes, based on raw NGS reads and an optional target reference. mitoMaker calls well known assemblers and algorithms, such as SOAPdenovo, MIRA and blast+ and parses their results providing easily readable outputs, such as FASTA, GENBANK, SEQUIN, PNG and others. General pipeline: 1-iterative De Novo assembly, with different k-mer values, trying to assemble a build that matches a target mitochondrial genome given. 2-searches for all mitochondrial gene features and circularization. 3-stores the best result found. 4-uses the best assembly as backbone for a reference based assembly, using MIRA and MITObim, trying to extend the mitogenome and close gaps. 5-annotates the best assembly, identifying the start and end position of each and every feature. 6-creates a folder with all the results (PNG, GENBANK, FASTA, SEQUIN, CAF, MAF and a stats logfile). -
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BEYE (Binary EYE) is a free, portable, advanced file viewer with built-in editor for binary, hexadecimal and disassembler modes. It contains a highlight AVR/Java/i86-AMD64/ARM-XScale/PPC-64 and other disassembler, full preview of MZ,NE,PE,ELF and other.
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PASHA: Parallelized Short Read Assembly
One of the fastest parallel short read assemblers for large genomes.
...Our evaluation using three small real paired-end datasets shows that PASHA is able to produce better assemblies with comparable genome coverage and mis-assembly rates compared to three leading assemblers: Velvet, ABySS and SOAPdenovo. Moreover, PASHA achieves the fastest speed for all three datasets on a single CPU. For the human genome, PASHA achieves competitive assembly quality with ABySS and is able to complete the assembly in about 21 hours, which is about 2.38× faster than ABySS on the same hardware configurations. -
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SOAPsv
SOAPsv: is a program for detecting the structural variation
...In this method, we examined only homozygous structural variations because detecting heterozygous structural variations requires assembly of haplotype sequences, which is not yet possible using existing assemblers. -
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Simple 8085 assembler and disassembler for educational use. The 8085asm generates the map file and intel hex file. It support the directives EQU, ORG, DB, DS and END.
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MEDDAC is the seeding point for designing a new approach to Operating System design itself. It is an Open Source project with roots in mainframe design and development the author began in 1979. Monitor Editor Disassembler Decompiler Assembler Compiler
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