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MOLGENIS can be used to generate databases for life science experiments (micrroarray, mass spectrometry, genomics) having a web user interface, csv exchange format, and programmatic interfaces (web services, rest, and r-project). See NatRevGen 8.
A java interface to the open source LabRAD framework for distributed instrument control and data acquisition. JLabRAD facilitates rapid development of client/server LabRAD applications.
Gramin Fleet Management protocol API. This is an effort from JBay Solutions, and is now being tested in a production environment . Source code is already available. Documentation and examples will be provided soon enough.
A Java library that works with Java3D to simulate and visualize, in real-time, dynamics of multiple rigid bodies that are restricted by implicit and explicit constraints (e.g., robotics); designed for efficiency, ease-of-use, and extensibility.
Maximum entropy is a powerful method for constructing statistical models of classification tasks, such as part of speech tagging in Natural Language Processing. Several example applications using maxent can be found in the OpenNLP Tools Library.
netcdf-tools is a set of tools for creating netCDF files. It supports command line use on both Windows and Unix as well as use directly as a Java library. Written by CSIRO Australia and funded by the ANDS Australian Research Data Commons Project
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Real time micro benchmark multi-lingual suite (RTMB) provides a good way to measure the deterministic quality of hardware, an operating system, or a Java Virtual Machine. RTMB consists of benchmarks in C, C++ and Java
EMBOSS is a dynamic and comprehensive Open Source package for bioinformatics (DNA and protein sequence analysis, protein structure, phylogenetics, etc.). EMBOSS is written in C, also compatible with C++, and has a separate Java interface (Jemboss)
Anna is lightweight Java framework to build pipeline systems of any kind.
It will take care of recurrent needs such as dependency management, data serialisation and synchronization as well as parallelization of execution.
This project is to develop web applications and data integration functions to provide information on the collection records, ecology, geographic distribution, and taxonomic concepts of the vascular flora of the region.
Wikipedia Concept Association Map (WCAM) is new approach for textual knowledge representation and understanding. All concepts and associations are stored in a graph database for better performance and easy distribution.
Trial Criteria Online Data Entry (trialCODE): a Java-based user interface that codifies eligibility requirements used to automate the screening of potential subjects to clinical trials. Used for caMATCH screening engine on BreastCancerTrials.org site.
jQuantum is a Java program to simulate a quantum computer, to design quantum circuits, and to visualize the execution of quantum algorithms. Another main purpose, however, is to create images in your head, and thereby - understanding.
vMAGIC is a Java-API which helps creating VHDL generators and analyzers. vMAGIC comprises three parts: 1st a VHDL'93 compliant parser, 2nd a programming model to easily create and modify VHDL constructs, and 3rd a VHDL Writer to generate code.
Elly is a reasoner for entailment and satisfiability checking of ELP knowledge-bases. It is written in java and relies on the IRIS Datalog reasoner (https://sourceforge.net/projects/iris-reasoner) for its implementation.
The Evolutionary Environment Simulator (EvESimulator) is an agent-based economy simulation framework which provides a broader view on evolutionary aspects within a Digital Business Ecosystem.