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Searches arbitrary text input (logs, etc) for regular expression(s) matching, and then executes arbitrary SQL statement(s) with matched substrings used as parameters. Offers daemon, incremental and transactional features.
SACIC - Semi-Advanced Command Interpreting Calculator - is a small calculator application capable of evaluating mathematical expressions with arbitrary precision, handling variables, drawing graphs, solving equations and more. It also supports simple scr
LineageEvolver is a simulation system for molecular evolution. Sequence evolution is simulated using modular processes such as substitutions, gene duplication/death, horizontal gene transfer, and more.
neochip is a collection of algorithms for high-density oligonucleotide microarrays. The current version contains heuristic algorithms that attempt to improve the quality of arrays by re-designing their layout (the location of the probes on the chip).
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Epsilon decomposition creates block diagonal matrix by permuting matrix rows and columns and by removing matrix elements that are less than epsilon. Epsd can be used in decentralized control in order to find what parts of the system are weakly coupled.
Curve Captor is a free (distributed under GPL) vacuum tube modeling software that brings the advantages of modern computer simulation tools to design of vacuum tube electronics.
Xconq is an engine for turn-based strategy games. Variety of game genres run under Xconq: historical, sci-fi, fantasy, and modern. AIs. Network games. Multiple UIs and platforms. Easy-to-learn game design language. Large games library available
runsbml - Pathway Simulation Tool emulates the dynamics of biological pathways by calculating concentrations of biochemical compounds at different times and conditions.
The Linear Algebra class library for Java provides a full set of tools to programmers who need linear algebra operations to use in their own projects.
Currently the library supports elementary matrix operations.
The Unit Command Climate Assessment and Survey System (UCCASS) is a PHP survey script for creating dynamic surveys. Supports unlimited questions and answers, branching logic, bar graph results with filtering, CSV export, templates, time limits and more..
CloneAnalyzer is a tool for software quality analysis. It allows you to find, display and inspect clones, which are fragments of duplicated source code resulting from lack of proper reuse. It can be used as a plugin for Eclipse and on the command line.
IndelExtractor is a GUI and command-line application written in Perl that generates various molecular sequence alignment masks, including one to make identification and removal of Indels and their surrounding ambiguous alignment quick and simple.
Java Randomness Test Suite is a gui application to run randomness tests on random stream resource (file or algorithm). Application can be run in command line. Includes general statistical tests, NIST and DIEHARD tests.
JTAG base library, ARM7TDMI and MIPS debugger stubs for GDB.
Extendable architecture to add JTAG device drivers, debuggers, and custom JTAG applications.
The phase machine program allows supervised classification of DNA sequence data from different populations using haplotype sequences generated by the PHASE program.
REPCAL (REverse Polish CALculator) is a light and fast calculator in RPN (reverse polish notation) mode for the console (command line). It is written in 180 lines of Python code, and can be used both interactively or inside shell scripts.
If you ever needed to perform a variety of functions on a lot of different numbers, Funct is for you. It allows one to create, store, and modify functions which they can apply to numbers from the terminal. Funct is designed to be easy to use but powerful.
A command-line program to manipulate annotated genetic sequences (initially in EMBL format). The user supplies a pattern to identify which features or qualifiers to process. These can then be deleted, renamed etc
Multilayered feed-forward neural network software written in C++. Backpropagation and RPROP are available as training algorithms. Design goals: speed of execution when calculating the output to new data, and quality of training (preprocessing: PCA).
A project to develop in C a command line based assembler/simulator for 8 bit microprocessors used in bare embedded projects. Currently, the motorola 6502 and intel 8051 are supported. Support for other microprocessors may be added.