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neochip is a collection of algorithms for high-density oligonucleotide microarrays. The current version contains heuristic algorithms that attempt to improve the quality of arrays by re-designing their layout (the location of the probes on the chip).
qsh is a shell for any operating system. It is coded in java so it inherits the pros and cons of java. It is in a very nascent stage, but all the regular commands work: Directory navigation, file tasks etc.
ISAS is a configurable computer instruction set architecture simulator, written in Java, that can be used to quickly define, test and measure performance of computer instruction set architectures.
DNAGalaxy is an attempt to produce an open-source bioinformatics software alternative to the expensive DNAStar Lasergene software. Its features currently include Blast and Entrez searching, a frontend to clustal and a sequence editor. It requires java1.5
The Linear Algebra class library for Java provides a full set of tools to programmers who need linear algebra operations to use in their own projects.
Currently the library supports elementary matrix operations.
MicroArray Genome Imaging and Clustering Tool (MAGIC tool) is a platform-independant java program for analyzing MicroArray data (.tiff scans & .txt godlists) via graphs and clustering operations (including QT-clustering). http://www.bio.davidson.edu/magic
A Java API for manipulation of GDSII stream data. It is intended to provide a useful, reusable and platform independant library for CAD/CAE application developers.
This API Requires the Java Backus-Naur Test API (JBNT). You may download it from:
ht
Alan is a Java Implenmentation of a Turing Machine for educational purpose. Features include: - Easy to use GUI - Many example Programs - ReUsable Turing Machine Component
Mobile Agent Server and Controller(MASC) - is a server, controller and viewer for aglets, written in Java, with an attractive and user-friendly GUI .MASC is easy to install and configure.It also provides mail notification,schedule,aglet class browser,etc.
An Java artificial intelligence platform comprising common AI tools (neural networks, genetic algorithms, wavelets, etc...) and examples. The platform focuses on ease of use and ease of integration..
TurboGPS is a Java application giving a comprehensive solution for GPS handling. This includes easy editing, sorting and displaying (on a map) waypoints. TurboGPS supports Garmin serial devices and WGS84/RT90 Datum.
Phoenix is an information extraction engine written in java.
Controlled by rules (declared in xml), it extracts information form any XML document (unstructured XHTML/OpenOffice documents). Supports XPath, additional conditions and top-down decomposit
This is a prolog-like programming language based on the fuzzy logic. It includes the class-libraries for fuzzy logic, probability theory and method of resolution, all made in C++. Java releases possible in the future.
JSpice is a Java Wrapper (using JNI) for the CSpice library provided by NAIF.
Goal of JSpice is to provide a full portable version of CSpice wich is used to calculate geometricals parameters of spatial mission as Cassini/Huygens.
JLAL is a linear algebra package for java, providing an easy to use object-oriented API. The library supports arithmetic operations, inversion, various matrix decompositions, solution of linear equations, and more.
FormantStat is a collection of tools for formant
statistics (phonetics and linguistics): Data Splitter/Extractor,
Plotter, Analyzer and Normalizer. It is (being) written
to help the research on the formant patterns of vowels
in human speech.
EM Demonstration is a little tool for Physics teachers and students that helps model electric fields in flux lines as well as draw equipotential regions. Simply put, it is a classroom demonstration/modeler. Please help support us and donate.
This is a collection of utilities and other nifty code items developed by Thought River for use in internal projects, and made available here for public use.
Driver support for 3D Controller Hardware. We hope to support SDL Input, DirectInput, and other major controller API's including game consoles and embedded systems.
A java framework for developing meta-heuristics that supports the use of grids environments. The meta-heuristics planned to be realeased are GAs, VNS and NNs. The grid middleware that will be firstly explored is the OurGrid solution.
FeapUI gives a graphical easy-to-use interface to the fem (finite element method) programm FEAP by R.L. Taylor (www.ce.berkeley.edu/~rlt/). FeapUI runs on Linux/Unix and Windows with java. This gives you more "Feaping" and lesser maual reading.