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Genevar (GENe Expression VARiation) is a platform of database and web services for the integrative analysis and visulization of SNP-gene assocaitaions in eQTL studies.
Dynamic COBOL copybook parser for Java. Supports parsing and writing of application data based on parsed copybooks. Coverts COBOL types to Java types and back to COBOL types with validation.
IDEA (Interactive Display for Evolutionary Analyses) augments PAML with a graphical interface, phylogeny reconstruction using PhyML or PHYLIP, convenient and efficient parallel processing and visualizations.
GridABM is an easy-to-use toolkit to develop high-performance agent-based models (ABMs) in Repast. GridABM facilitates large-scale simulation of ABM on multicore computers, local computing clusters, or computational grids.
This is a movement to use Android platform manager. Users can record the exercise of data, and upload to the Internet, with like-minded friends to share! Web:http://192.192.155.87/myindex.php
Aplicación de escritorio cuyo objetivo reside en el tratamiento de imágenes provenientes de estudios de microscopía especular.
A partir de estás imágenes se aplicarán algoritmos a cada célula con el objetivo de identificar posibles enfermedades.
Open source, cross platform drivers and function library for the NovInt Falcon Haptic Controller. These drivers are not produced by Novint Technologies, Inc. and do not come with any warranty as to their correctness or usage.
PocketDepth helps determine binding grooves for protein molecules. Applicable in Bioinformatics and Drug discovery.
Literature - http://www.ncbi.nlm.nih.gov/pubmed/17949996
Author's thesis - http://openwetware.org/wiki/Kalidas_Y
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JFlux is a java library and graphical user interface to work with flow cytometry data. In particular, it is adapted to the COPAS biosorter and can analyze expression profiles.
OO Pinyin Guide is a Java extension for OpenOffice 3 or higher. It enables the user to add pinyin transliteration over Chinese characters inside a text document. This tool can be useful for people learning or teaching Chinese.
It's a project to predict peptide fragmentation of mass spectrometry. Check the detail at Anal Chem. 2011 Feb 1;83(3):790-6. On the accuracy and limits of peptide fragmentation spectrum prediction. Li S, Arnold RJ, Tang H, Radivoja
A comparative map and trait visualization framework enabling visual integration of genomic data from disparate data sources and allowing rich client-side interactivity and manipulation. Extensible through plugins for new datasources and algorithms.
JTHERGAS (a JAVA implementation of THERGAS) estimates thermodynamic information from two dimensional graphical representations of molecules and radicals based on the Benson additivity method.
Protein Data Bank transformed into an SQL database with a very powerful search engine and a rich web interface. The engine combines chemical, sequence and 3D structure searches. The interface provides statistics, sequence and 3D structure alignments.
A tool to construct the metabolic networks from KEGG, and compare the constructed metabolic networks. Phylogenetic trees can be constructed along the case.
library for capturing, storing and visualizing timeseries data
The JTimeSeries has moved to github
Please go to https://github.com/JTimeSeries/jtimeseries
The SourceForge copy has not been maintained since Sep 2012
A java library to assist with capturing and storing timeseries data/metrics. Provides facilities to publish timeseries data across a network, a lightweight server to persist series data, and client user interface components for real time visualization
GribCS is a .NET library to read GRIB (GRid in Binary) files. GRIB is a gridded data standard from WMO (World Meteorological Organisation) and is used by many meteorological organisation. Based on "Java GRIB reader".
This program provides for easy modification and viewing of SPICE circuit files. It will also read SPICE3 RAW format (as well as GnuCap) and create graphs of results through an interactive GUI. It supports waveform math, copying to clipboard, and saving.
GridSim allows modeling and simulation of entities in parallel and distributed computing systems such as users, applications, resources, and resource brokers/schedulers for design and evaluation of scheduling algorithms. http://www.gridbus.org/gridsim
eHx is a Medical history Manager, developed as a Software as a service (SAAS), using jax-ws, it will be realized in J2EE technology, in that way it permit to implement many different interfaces (web interface, Intel based MCAs, ipad, android pads)