Search Results for "c source code" - Page 87
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Showing 8973 open source projects for "c source code"
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parSRA
Portable Framework for the Parallel Execution of Short Read Aligners
...It uses the following techniques in order to improve scalability: 1) a fast splitting of the input reads using the FUSE kernel module available in most of current Linux distributions; 2) a balanced on-demand distribution of the reads based on the shared locks of UPC++, an extension of C++ for parallel computing that follows the Partitioned Global Address Space (PGAS) paradigm. parSRA is portable as its configuration file allows the users to parallelize the execution of existing SRA tools without the need to modify the source code of parSRA or the aligner. -
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alio
An "Alternative IO" layer.
The alio library can be dynamically pre-linked to existing executables and replaces file IO (i.e. calls to glibc's IO functions). This allows to gather statistics about IO, create IO trace files, or even implement a different IO behaviour (e.g. use separate IO servers to handle IO). -
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A More Accurate Fourier Transform
Computes Accurate Fourier Transform via Explicit Integration not FFT
...It has been shown recently that EI methods can be more accurate than FFT methods (Courtney and Courtney, A More Accurate Fourier Transform) for scientific data analysis and that EI methods can be implemented in reasonable times with modern computing power. This project makes the source code (and command line Windows executable) developed in that study openly available for scientific and engineering uses. -
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Alpha stable distributions for C++
C++ code to perform Alpha stable fit
This code is the translation into C++ of part of the Matlab code from Mark Veillette available at: http://www.mathworks.com/matlabcentral/fileexchange/37514-stbl--alpha-stable-distributions-for-matlab -
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Techne (R) 3D CAM
CNC machine code generation for 3D models
A 3D only CAD/CAM program for generating CNC code from existing models. The focus is on importing an existing 3D model (STL files) and providing basic manipulation capability, like rotation, scaling, etc. It does not support building 3D models from scratch. GCode and Shoptbot toolpaths are generated from the model. Multithreaded. This is a standalone companion product to the Techne (R) CAD/CAM project. -
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starrynite is an image analysis tool for tracking fluorescently-labeled nuclei during C. elegans embryogenesis.
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A toolkit in C++ and python to process both experimental and simulation data of colloidal particles. Includes among others * a multiscale particle tracking algorithm [1] whose C++ implementation is optimised for 3D confocal data. Python implementation is more versatile (2D and 3D data). * a Leica file reader, * Steindhard bond orientational order calculation * a VTK file writer 1. Leocmach, M. & Tanaka, H. A novel particle tracking method with individual particle size measurement...
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Ichnaea
Performance Timing Tools
Ichnaea is a set of tools that aid in collecting and tracking parameters and timings for parallel applications. The Performance Modelling Timing Module, PMTM, is a library that wraps system timing calls to abstract these from code developers and aid portability. It also has functionality to store parameters and print those, along with the timing information to a comma separated variable file. The Performance Modelling Analysis Tool, PMAT, is coming soon. This is able to read in and... -
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That project aims at providing a clean API and a simple implementation, as a C++ library, of a Travel-oriented fare engine. It corresponds to the simulated version of the real-world Fare Quote System.
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That project (RMOL) aims at giving developers concerned by the Revenue Management arena a library delivering a reference implementation for most of the published algorithms and methods. That library is intended to be used in simulated environment: it does not intend to be used in real world production systems.
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BDM generator
C generator for binary protocol parsers
From a description of a protocol in OpenDocument format, generate a C parser for this protocol. For now supports only binary protocols with fixed-size frames (several frames can have different sizes but a frame shall always have the same size). - Verify validity of each field of a frame before validating the frame and copying its content to a destination dictionnary. Can be used to generate parsers for CAN protocols like J1939, custom serial protocols... -
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That project aims at providing a clean API, and the corresponding C++ implementation, for choosing one item among a set of travel solutions, given demand-related characteristics (e.g., Willingness-To-Pay, preferred airline, preferred cabin, etc.).
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MoleQueue
Desktop integration of high performance computing resources
MoleQueue is an open-source, cross-platform, system-tray resident desktop application for abstracting, managing, and coordinating the execution of tasks both locally and on remote computational resources. It is built and tested and Linux, Mac OS X, and Windows, with nightly binaries currently available for Mac OS X and Windows. Users can set up local and remote queues that describe where the task will be executed. Each queue can have programs, with templates to facilitate the execution of... -
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That project aims at providing a clean API and a simple implementation, as a C++ library, of an Airline-related Inventory Management system. That library uses the Standard Airline IT C++ object model (http://sf.net/projects/stdair).
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ESBTL (Easy Structural Biology Template Library) is a lightweight C++ library that allows the handling of PDB data and provides a data structure suitable for geometric analysis and advanced constructions.
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OpenTRV
Open-Source Thermostatic Radiator Valve
Retrofit completely-open reference mechanical/hardware/software design for zoned heating control not relying critically on any proprietary/hacked components. The aim is to include at least one complete mechanical and software design for a replacement TRV head that can be retrofitted without any plumbing plus at least one simple boiler control to allow end-to-end open soft heating zoning, with the ability to connect to home automation system or the Net if required. -
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PetaVision
Accelerated Open-Source Neuromorphic Computing
///////// NOTICE We have migrated to GitHub: https://petavision.github.io To clone an updated repository of the PetaVision codebase, please go to our page on GitHub. ///////// PetaVision is an open source, object oriented neural simulation toolbox optimized for high-performance multi-core, multi-node computer architectures. PetaVision is intended for computational neuroscientists who seek to apply neuromorphic models to hard signal processing problems; both to improve on the... -
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IRST LM Toolkit
A toolkit for language modeling.
IRSTLM is no more supported on SourceForge. Please visit the new IRSTLM official website: http://hlt-mt.fbk.eu/technologies/irstlm IRSTLM: A tool for the estimation, representation, and computation of statistical language models. IRSTLM, the IRST Language Modeling Toolkit, features algorithms and data structures suitable to estimate, store, and access very large n-gram language models. Our software has been integrated into a popular open source Statistical Machine Translation... -
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SWAPHI-LS: Alignment on Xeon Phi Cluster
Smith-Waterman long DNA sequence alignment on Xeon Phi clusters
The first parallel Smith-Waterman algorithm exploiting Intel Xeon Phi clusters to accelerate the alignment of long DNA sequences. This algorithm is written in C++ (with a set of SIMD intrinsic extensions), OpenMP and MPI. The performance evaluation revealed that our algorithm achieves very stable performance, and yields a performance of up to 30.1 GCUPS on a single Xeon Phi and up to 111.4 GCUPS on four Xeon Phis sharing a host. -
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Adaptive Gaussian Filtering
Machine learning with Gaussian kernels.
Libagf is a machine learning library that includes adaptive kernel density estimators using Gaussian kernels and k-nearest neighbours. Operations include statistical classification, interpolation/non-linear regression and pdf estimation. For statistical classification there is a borders training feature for creating fast and general pre-trained models that nonetheless return the conditional probabilities. Libagf also includes clustering algorithms as well as comparison and validation... -
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wxFES
A rather simple finite element software implementation
wxFES is the free porting of the finite element c++ code that I started implementing during the last year of my PhD studies in Electromagnetics at the University of Florence. The goal is to provide the building blocks for an efficient and easy to use finite element code, starting from electromagnetics problems formulations -
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xorlisp
Bit level lambda continuations and nothing else - Queue automata
Not working yet. To deal with the Halting Problem, computing and data are navigated using debugger ops: linearForward and treeForward, which navigate an astronomically large bit string where 1 is ( and 0 is ). All pairs are derived from (). For example, true is represented as ((()())()), and false is (()(()())). It appears related to the church encoding of lambda where T chooses first parameter and F chooses second, of a pair. Continuations are nearly finished code and are represented as a... -
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