Search Results for "linux shell" - Page 8
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Showing 355 open source projects for "linux shell"
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PAMELA Schrodinger-Poisson Code
self-consistent schrodinger-poisson code for core-shell nanowires
PAMELA (Pseudospectral Analysis Method with Exchange & Local Approximations) is a self-contained suite of MATLAB codes that can calculate electronic energies, densities, wavefunctions, and band-bending diagrams within a self-consistent Schrödinger-Poisson formalism. -
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NaRIBaS
Unix-based preparation and analysis toolbox for molecular simulations
Unix-based preparation and analysis toolbox for Nanomaterials and Room Temperature Ionic Liquids in Bulk and Slab using bash scripts, Gromacs tools and Matlab functions. NaRIBaS provides a framework that decouples user input parameter and terminal based command lines. NaRIBaS does not replace a simulation software and specific analysis tools like Gromacs, but it allows iterative repetition of tasks while changing specific input parameter. The toolbox is to be understood as a scripting... -
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ForeRunner X01 toolkit provides an easy access to Forerunner 201/301/305/305E GPS-units. There are multiple command line tools to read data from GPS into database and tools to export data in different formats like gpx and tcx.
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Decision Table Preprocessor
Ccide is a Decision Table preprocessor.
Ccide reads a source program, in one of several programming languages, expands all embedded decision tables, and generates the new, expanded source. Ccidew processes C language programs directly. The script, ccide, uses ccidew and m4, to process BASIC, JAVA, CC, C++, BASH, QB, VB, and EX(euphoria), source files containing embedded decision tables. Ccide checks all conditions once and only once, avoiding side effects. Ccide checks tables for conflicts and other... -
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ChesROMS is developing a ROMS model of the Chesapeake Bay to help in the prediction of Harmful Algal Blooms. We hope to catalyze a new method of community modeling with involvement beyond the core researchers of the ChesROMS project.
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denovo_solid_pipeline
Pipeline for small genome assembly using SOLiD sequencing technology
denovo_solid_pipeline (DSP) is a semi automated pipeline for short genome assembly using SOLiD sequencing data. The main features of the pipeline are the optimization of the number of read-correction runs and computational resources via dynamic programming. DSP also has the advantage over the currently available pipeline (denovo2) of generating more contigs suitable for further assembly steps, increasing the chances of detecting sequencing errors and/or polymorphic sites. -
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ipmems
Real-time data acquisition and visualization software
Cross-platform data acquisition and visualization software with an embedded HTTP-server, binary protocol parsing library, protocol emulation server, remote secure administration server, embedded Groovy scripting facilities and HMI (SCADA) visualization module. -
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minder
Monitoring your infrastructure for free.
This software presents a flexible and configurable proposal for monitoring and management of real and virtual HPC infrastructures, compatible with paradigm of cloud computing. We help you to answer: 1) What is the performance of my resources? 2) What equipment and resources do we have already? 3) What do we need to upgrade or repair? 4) What can we consolidate to reduce complexity or reduce energy use? 5) What resources would be better reused somewhere else? Status: PreAlpha, so... -
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SOAPsv
SOAPsv: is a program for detecting the structural variation
This is an approach that complements previous methods for reliable homozygous structural variation identification. Our approach accurately determines genotype and breakpoints relative to a reference genome based on de novo assembly of Illumina Genome Analyzer sequencing data. In this method, we examined only homozygous structural variations because detecting heterozygous structural variations requires assembly of haplotype sequences, which is not yet possible using existing assemblers. -
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QConsole is a custom Qt widget implementing a standard console to be inherited to support a specific scripting language or shell, and then embedded in any Qt application. As example, a Tcl console (QtclConsole) is provided for use in EDA applications
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Development and support of OCFA have been discontinued. the code has moved to these github repositories: https://github.com/DNPA/OcfaLib https://github.com/DNPA/OcfaArch https://github.com/DNPA/OcfaJavaLib https://github.com/DNPA/OcfaModules https://github.com/DNPA/OcfaDoc If you are interested in contributing to ongoing work on the creation of a community maintained OCFA inspired computer forensic framework, please join the Mattock/MattockFS community page on...
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CPU Balance
User-based CPU quota tool
CPU Balance is a Perl script to balance the CPU usage among users. It will allocate CPU resource to each user equally only by the command renice, no matter how many processes/threads a user runs. ################ # Basic Renice Goal ################ 1. User-based balance: every user get the same cpu percentage if they ask for more; 2. all the jobs of one user has the same NI; 3. NI of all jobs tend to move as large as possible when balanced; 4. No sudden change on NI. max... -
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Console based notepad number cruncher makes calculations fast and simple, yet with ample features under the hood. With log turned on, you can record your session on-the-fly from any open instance of the program.
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Arduloko OS
Sistema Operacional
Sistema Operacional baseado no Ubuntu 11.04 (natty) 64bits destinado à profissionais e estudantes de eletrônica. O sistema foi gerado principalmente para trabalhos elaborados com o hardware arduino, mas foi evoluindo e hoje trabalha com vários outros equipamentos. A senha para login (Arduino ou root) é arduino. Foi criado pelo programador Uberlan G. Soares. Para baixar pelo DropBox, eis o link: http://dl.dropbox.com/u/65818773/arduloko.iso User: Arduino Pass: arduino User:... -
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FFP (Feature frequency profile) is an alignment free comparison tool for phylogenetic analysis and text comparison. It can be applied to nucleotide sequences, complete genomes, proteomes and even used for text comparison.
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Pyanpha
A python program to use multiwavelength anomalous surface diffraction
pyanpha is a shell-based program, which applies the multi-wavelength anomalous diffraction technique to Surface Diffraction. It enables one to calculate the phases of the structure factors of crystal truncation rods when anomalous scatterers are present in the thin film. Functionality extends to standalone simulations. It was coined pyanpha which is an acronym for PYthon ANomalous PHAsing and it is written in python. -
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PODWG is a Wallpaper Generator from various "Picture Of the Day" sources such as NASA's "Astronomy Picture Of the Day".
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PortableLatex is LaTeX without installation; you download and use it straight away, without changing a byte of your system. Plus a complete suite of apps to comfortably edit, view, compile and handle latex or tex projects, glued by some scripting.
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ALEXA-Seq is a method for using massively parallel paired-end transcriptome sequencing for 'alternative expression analysis'.
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FreeCeilo is an interface for ceilometer CL31.A shell script is used for collecting data from the ceilometer and freeceilo is used for plotting the data.Tested and developed in SPACE ,Trivandrum
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Software, components, utilities and XML schema model for automating the exchange of engineering data for the capital facility industry over the total facility life cycle, including design, procurement, construction, operations and maintenance. Detailed cfiXML guidelines and example data dictionaries for control valves, electric motors and pumps, including information on the HI 50.7-2010 Electronic Data Exchange for Pumping Equipment Standard, are available from the website.
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osm2postgresql is a Linux script loading openstreetmap data into a postgresql database setting up if needed a server & database (postgis+hstore). Advanced processing is performed, easing rendering. http://wiki.openstreetmap.org/wiki/Osm2postgresql
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A set of Unix command line tools for quick and convenient batch processing of tabular text files (a.k.a., tab-delimited, csv, or flat file format) with a header line. Provides delimiter and compression detection, column reference by name. * tblmap: per-line ("map") computation: derive columns through an expression, delete, reorder, filter rows. * tblred: compute ("reduce") aggregations (e.g., sum, average) over groups defined by key columns. * tbldesc: Summarize columns in file...
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***** Discontinued (may still work but will not be updated and supported anymore) ***** This extension connects the simulation platform NetLogo with the statistical analysis software R via Rserve. It adds some new primitives to NetLogo, which offers the interchange of data with R and the call of R functions from NetLogo. See the documentation for more details. There is a similar extension, which use a direct connection to R via rJava/JRI, see http://r-ext.sourceforge.net. This...
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An open-source collection of materials for lectures, tutorials, labs, and software for a variety of primarily Computer Science courses. The materials include various course notes, presentation slides, source code samples, etc.
