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SOMMS is an analysis program for mass spectra intended for bio-informatics research. Its goal is to relate theoretical spectra with raw data. A previous version, accompanying an article published in Rapid Comm. in Mass Spectrometry, was written in Perl.
PANDA (Protein And Nucleotide Data Archive) unifies the archival of the sequences from Taxonomy,GenBank,RefSeq,UniProt,PDB,and PRF on a regular interval to build and maintain a Protein and Nucleotide data archive. This project is part of BRC project fund
geolocate is a front-end java program that works with google maps to provide dynamic maps to users. Combined with the flexibility of XML and the power of javascript, users can see various relationships on their map to draw conclusions.
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iSNS is an interactive neural network simulator written in Java/Java3D. The program is intended to be used in lessons of Neural Networks. The program was developed by students as the software project at Charles University in Prague.
The simpliZia-program implements the simplex-algorithm and is designed to help students of Operations Research to understand and learn the algorithm. This is a german project, source and program are actually written in german.
easySP is a Graphical application that allow learn signal processing easiest. Students can play with the parameter of each module to understand for example how works a digital filter. easySP also permits the addition of new modules by a xml plugin.
AstroWeka is a set of extentions to Weka, a popular data mining program, which which allows it to work directly with astronomical data in the Virtual Observatory.
K-automaton is a new parsing (syntactic analysis) machine isomorphous to language. Implemented in Java. Can generate Java code from grammars described in EBNF.
The Evolutionary Environment (EvENet) provides a P2P Network for guiding the evolution of Software Services and Service Compositions over time. This evolution is based on knowledge sharing and optimised using GA and Agent Systems. It is part of the DBE.
A Open Source 3D Immersive simulation environment, like the "second life", with some distribuited processing tools, to make the GRID power growup with every new node (client machine) attached.
PARs is a bioinformatics tool for the analysis of cis-regulatory DNA sequences. Composed of two parts: a suite of sequence analysis algorithms for predicting cis-binding sites in DNA sequences and a GUI for visualisation and exploration of the results.
ReactionLab is a software package aimed for a unified computer environment to kinetic modeling of chemical reaction systems. The present implementation is founded on Matlab and Java-Swing GUI, with an interface to legacy C (and Fortran) codes.
jFITS is a JavaSwing based application and applet for quickly viewing and performing simple operations on astronomical FITS formatted CCD imaging data.
Simulación is a participatory simulation framework used to organize computer-mediated laboratory experiments to explore, model and reproduce mechanisms of collective behaviors.
JOrigami is a collection of algorithms for computational origami.
Some algorithms studied by computational origami does not have an implementation. JOrigami solves the famous and funny fold-and-cut using Demaine's disk packing implementation.