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GELLO is an ANSI-accredited HL7 standard for creating computable, unambiguous clinical queries. This project creates an open source compiler and client-server IDE. Projects are stored in a subversion repository, and created by the RCP based client.
AstroWeka is a set of extentions to Weka, a popular data mining program, which which allows it to work directly with astronomical data in the Virtual Observatory.
SOMMS is an analysis program for mass spectra intended for bio-informatics research. Its goal is to relate theoretical spectra with raw data. A previous version, accompanying an article published in Rapid Comm. in Mass Spectrometry, was written in Perl.
Open2Dprot is an open-source proteomics project for the development of bioinformatic tools for n-dimensional protein expression data analysis of quantified protein expression across multiple samples from research experiments.
K-automaton is a new parsing (syntactic analysis) machine isomorphous to language. Implemented in Java. Can generate Java code from grammars described in EBNF.
A Open Source 3D Immersive simulation environment, like the "second life", with some distribuited processing tools, to make the GRID power growup with every new node (client machine) attached.
ReactionLab is a software package aimed for a unified computer environment to kinetic modeling of chemical reaction systems. The present implementation is founded on Matlab and Java-Swing GUI, with an interface to legacy C (and Fortran) codes.
jFITS is a JavaSwing based application and applet for quickly viewing and performing simple operations on astronomical FITS formatted CCD imaging data.
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Simulación is a participatory simulation framework used to organize computer-mediated laboratory experiments to explore, model and reproduce mechanisms of collective behaviors.
Java Evolutionary MultiAgent System allows user to solve multiobjective optimization problems using evolutionary algorithms with energetical elitism in multiagent system. It allows also to perform test using varied metrics.
JOrigami is a collection of algorithms for computational origami.
Some algorithms studied by computational origami does not have an implementation. JOrigami solves the famous and funny fold-and-cut using Demaine's disk packing implementation.
Jyrax is a Java-based, embeddable DAS/2 client designed to work with the 'assay' portion of the evolving DAS/2 specification. Jyrax can query a DAS/2 server and select microarray or other experimental data for retrieval.
JMatrixCalc is a Java package used for matrix calculations. It's aim is to make developing many scientific (and non-scientific as well) project much easier and quicker. These projects include: educational software, statistics and many others.
A visualizer for FRAM (Functional Resonance Accident Model), a JCS-model developed by Erik Hollnagel at LiU, Sweden. This tool helps modelling the the FRAM table and visualize it. This project has moved to http://code.google.com/p/framvisualizer/
PARs is a bioinformatics tool for the analysis of cis-regulatory DNA sequences. Composed of two parts: a suite of sequence analysis algorithms for predicting cis-binding sites in DNA sequences and a GUI for visualisation and exploration of the results.
The virtual lab is a NASA-funded project to provide simulated instrumentation. ITG has developed a Virtual Microscope (Virtual SEM and LM) for viewing high-resolution, multi-dimensional image datasets. More info and data: http://virtual.itg.uiuc.edu
This SimCell.net project is an independent port of the SimCell java app.
The goal for this effort is to model molecular self assembly (cell membranes and other structures that not classified as molecules).