Search Results for "java program" - Page 7

Pontos is an easy-to-use, graphical Java program for the calculation of uncorrected distance (or similarity) matrices from DNA sequence alignments in PHYLIP format. It also creates "difference" alignments from regular ones (and vice-versa). It can handle gaps and ambiguities in different ways. Gaps can be: - all used; - all ignored; - ignored only at the ends of the sequences, in a pairwise manner; - ignored only at the ends, but now globally (in effect trimming the whole alignment to the farthest sequences from the ends). ...

...Apparently his observance of a harmonic law of planetary motion was reason for him to propose a computable system of pitch and harmony deriving from angular velocity. The purpose of the programming project is as a tool to examine his system. With Java 2, it provides an open-source solution for listening to harmonies so generated by planetary motion. This program can run on any computer provided with a Java Virtual Machine (Rev 1.5 or greater). JAVA 2, system independent. Purpose:to encourage research in harmony in astronomy, math and music. Obstacles:math, DSP/synthesis, networks, astronomy. ...

Molecular-based diagnostic assays are the gold standard for infectious diseases today, since they allow a rapid and sensitive identification and typing of various pathogens. While PCR can be designed to be specific for a certain pathogen, a subsequent sequence analysis is frequently required for confirmation or typing. The design of appropriate PCR-based assays is a complex task, especially when conserved discriminating polymorphisms are rare or if the number of types which need to be...

JFinisher is software for alignment, editing and manipulation of biological sequences. It aims to assist in the finishing of genome assembly. Starting from a reference sequence, the program align contigs using Smith-Waterman local alignment algoritm with auxiliary methods, allowing management of the alignments generated. It has graphical interface for manipulation and visualization of the actions, uniting features that help in editing the sequences. It has internal projects manageable and...

Calculate how many explosives (any type) needed to do many types of demolitions. This program run on mobile phones, so it is usefull for Armies because of mobility. It is programmed in JavaME. In compliance with US Army's FM 5-250 Explosives & Demolitions. THIS IS AN ONLY FOR ARMY APPLICATION.

Fachwerk3D calculates three-dimensional strut-and-tie models used by structural engineers for analysing and designing reinforced concrete structures. The program only uses the equilibrium conditions, thus it is not assuming elastic behaviour.

Fachwerk calculates strut-and-tie models used by structural engineers for analysing and designing reinforced concrete structures. The program only uses the equilibrium conditions, thus it is not assuming elastic behaviour.

A program for exploring complex functions, much like the now out-dated f(z). Domain colored plots of complex functions. Click evaluate. Uses reflection so you can code almost anything for your formula. All java. Please help.

A general purpose distributed hash table adapted for sequence analysis. This program searches for all maximal, exact unique n-mers from a given set of genomes. Originally, this program's primary use was to design resequencing microarrays.

For electronics engineers, when using open source EDA tools, one of big challenge is component schematic symbols and footprints. If you are creating footprints for component with more than 100 pins, it becomes very time consuming and challenging to create error free footprints. Here is a simple program to create footprints for open source EDA kicad. The idea is to describe footprint in .csv format and convert .csv to kicad footprint format. At preset program supports Kicad only, but can be...

FMI Workbench is a Java program useful in order to manage FMI, functional mathematical index.

Software for optimization of multi modal, multi dimensional functions based on SOMA algorithm. Program is implemented on top of hadoop, and is especially well suited for functions with high computational times because of its distributed nature.

jWords is a port of WORDS (by William Whitaker, a free latin-to-english dictionary program written in Ada), to Java. Besides the dictionary will be translated to the German language.

A program for converting between physical units, such as feet and meters. There is a Java library, for use in Java applications, and a PalmOS application. It is able to mix units and convert between systems, such as the Metric and the English systems

A program for cropping GPX track files. The GUI plots the GPX track (latitude vs longitude) and lets the user remove GPS points from the beginning and end of the track respectively. There is also a built-in Command Line Interface. Note: No development anymore since I found out that GpsPrune does all the things I was looking for.

The program creates OWL ontology files that describe relationships between entities. Basis are definitions found by searching Wikipedia articles for specific lexico-syntactic patterns.

The aim of this project is to develop a gear design program, which will be able to utilise any known contemporary tooth profile and perform strength calculations on it. A subsequent goal will be to include a life prediction functionality.

This is a program that lets you graph numbers into a pie chart!

The program versusSNP is a flexible tool for mining SNPs between two close related genomes. First, we align all the orthologous genes and select SNPs, then the SNPs are separated into categories based on their mutation types.

MSA2SNP is a tool for mining SNP sites in multiple sequence alignment (MSA). This tool inherits the easy-to-use interface from MEGA4 Explorer with advance data presentation. MSA2SNP lets you visualize alignments and import from CLUSTAL program directly.

A cross-platform Java program to turn a simple Geiger counter into the equivalent of a state-of-the art digital model, plus some – using your laptop computer.

Java program to create a (potentially multilingual) glossary of the unique words in any given Lojban text. Note that the Sourceforge page for this was superceded by the Bitbucket repository: https://bitbucket.org/pretoriusjf/vlastezba/overview Any further updates will be made there.

This program allows you to create a transmission hologram using just a computer, a laser-printer, and an overhead transparency. This hologram will behave like one created using a laser and can be projected or viewed with a point source.

This is a multi-threaded Java program that tries to maximise CPU utilization by separating and distributing the computational part of the work from the file reading and writing part by using separate threads.

The program simulates N trials of the Monty Hall Problem and outputs the successes of both switching and not switching the doors. http://en.wikipedia.org/wiki/Monty_Hall_problem http://www.youtube.com/watch?v=cXqDIFUB7YU