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A data display and analysis toolkit that will provide radio astronomers with a versatile mechanism for viewing and interpreting their observation data.
A command-line program to manipulate annotated genetic sequences (initially in EMBL format). The user supplies a pattern to identify which features or qualifiers to process. These can then be deleted, renamed etc
gnufe is a perlqt program that provides a front-end to gnuplot, the powerful plotting system. It is designed to work on a lot of data files, and should be fast to use via lots of keyboard shortcuts.
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Maztrix is a matrix library and program (written in ANSI C++) for computing matrix calculations. Maztrix can find determinants, row reduce, and much more.
HourMan 2003 is a Windows hour tally program designed to work with natural language input. It will read input by line (for an arbitrary number of lines) with data arranged in various forms, organize it by subject, and return the sum by subject.
ArrayOligoSelector (AOS) systematically designs gene specific long oligo probes for entire genomes. The program optimizes the oligo selections for several parameters, including uniqueness in the genome, internal repeats, self-binding, and GC content.
A Digital Signal Processing Program for educational purposes, written in Java, tested on Windows, should work on Linux too. Plugin architecture for inputs, outputs, filters, analisys.
Phight - a phylogeny tree building program
Currently, it supports Likelihood method and distance method. This program will includes diagnostic function as a special feature.
As of 2012, the source code is hosted in GitHub https://github.com/tessonec/PySPG
PySPG is both, a set of python modules and a program that allows the user to run a program systematically changing the parameters that them receive.
Originally conceived to generate parameters for running simulations in computational physics.
This computer tutorial program shows and explains structure of atoms and describes how bonds between atoms occur, as well as provides capabilities to access information about chemical elements such as atomic weight via an interactive periodic table.
...Each population is subjected to fitness calculation and if a suitable answer chromosome is found then vkas stops and the answer is printed. If a suitable answer is not found then the program stops after specified max generations are over.
CHIMP aims to provide a complete suite of tools for the investigation and modeling of chemical systems. It currently is able to parse chemical reaction mechanisms and run kinetic Monte Carlo simulations on the reacting system.
The Synaptic Simulator is a program which simulates models of single neuronal synapses and compartments, complex constructs of such models. Furthermore the program is able to regain parameters by fitting simulated results with experimental data.
lin-seti is a command-line program allowing to mantain a cache of work units for the Seti@Home client. Written in C, it should run on most unix-like systems, including linux. It is designed to be cache-compatible with 'Seti Driver' for Windows.
Natural Evolution is a slow process. Today's computing technologies give us a chance to accelerate and explore it. The goal of this program is to provide hand-held evolution.
I already created some versions using Mac OS X's Cocoa environment.
REMD toolkit is designed as a C++ framework to build a replica-exchange molecular dynamics (REMD) program, suitable for solving the multiple-minima problem that prevents accurate estimation of thermodynamical properties.
NGB is a computational algebra program (includes computing noncommutative Groebner basis). It is written in C++ and runs in Linux and will run in Windows. Runs stand-alone or with Mathematica.
KSetiSpy is a KDE program for monitoring the SETI@home client and displaying information about the data it analyzes.
It offers the same user interface as SETI Spy, a popular Windows utility.