E-BioFlow enables the scientists to design workflow using three different perspectives: control flow, data flow and resource perspective. The workflow tool is based on the Yawl engine and has support for BioMOBY and WSDL services and Perl and R scripts.
This is a project to wrap databases in order to use with java. The objective is to make the work with databases as easy as possible. In order to do this, every table will be wrap with a class of java.
JStatCom is a software framework that facilitates the creation of JAVA programs for data based analysis tasks in various domains. It provides ways to call routines from specialized software packages, like Matlab, Gauss, Ox, and possibly others.
Secure by design, portable by default. Recover clean, fast, anywhere. Start a free trial.
Try Veeam Data Platform today. Experience the unified platform that's secure by design, portable by default, and proven to recover clean, fast, and anywhere.
DNA sequencing quality values, base calling and trace processing
Tracetuner is a tool for base and quality calling of trace files from DNA sequencing instruments. Originally developed by Paracel, a Celera Business, this code base was released as open source in 2006. TraceTuner was used by Celera to call 30+ million reads from both Drosophila and human genome sequencing projects. In 2000, Applied Biosystems bundled TraceTuner with ABI3700 Genome Analyzers and shipped it to the customers of these capillary electrophoresis sequencers. Later versions of...
Jather aims to provide an easy to use library for clustered process execution in Java. This library aims to provide a simple API and allow applications to add clustering functionality with little change to the existing code.
The ProM Import Framework allows to extract process enactment event logs from a set of information systems. These can be exported in the MXML format, which is the standard event log data format for Process Mining analysis techniques.
Utility to translate "dvorcodes" (Dvorak keycap-encoded phrases) into their actual key values. For instance the dvorcode for "password" is "laoo,rpe". Use this tool to discover your dvorcode passwords when you must enter them on a QWERTY keyboard.
Calculating 2D-Gray-scale bitmaps Calculation of a 3D-rotation-body form a detected area by using different image processing algorithms. Developed for the German Aerospace Center (DLR). Used Projects: Substance (GUI)
Planning Tool is a tool developed by QualDev Group (Universidad de los Andes, Bogota, Colombia) created to support the planning process and to track project's activities for all the projects worked in the group.
A collection of applets used to demonstrate physics and math principles. The applets include: a ray diagram drawing applet, a collision of disks applet, an electromagnetic field mapper and a 3d hydrogen orbital simulation.
The Rossum Project is an attempt to collect and distribute robotics software. We are seeking help with our first project, a mobile-robot simulator featuring a 2-D virtual world, and new work including artificial intelligence and robot-control logic.
JOELib/JOELib2 is a cheminformatics library which supports SMARTS substructure search, descriptor calculation, processing/filtering pipes, conversion of file formats, 100% pure Java, and interfaces to external programs (e.g. Ghemical) are available.
ScreeningAssistant is a software based on JOELib and dedicated to the management of chemical databases. It allows the user to select a set of compounds for screening tests (High Throughput Screening or Virtual Screening).
The nofdp IDSS is an open source application for modeling flood control measures and 1D hydrodynamic flood simulation. Additional modules for ecological and spatial analysis, multicriteria evaluation and communication are included.
This is an architecture simulator. Its purpose is to help graduation students to learn how to build digital circuits, using from simple gates to full microprocessors, including memories and peripherals.
Java GUI to analyze one (or more, in batch mode) datasets with several feature selection methods at the same time and also performing an "ensemble" analysis. It can be easily extended to include any feature selection algorithm.