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Pulga is a program for numerical simulation of dynamical systems designed to provide students and researchers an easy way to model and qualitatively analyse their systems on a computer without the difficulty of traditional computer programming languages.
The program consgen takes multiple protein structures in PDB format and aligns them using a modified Procrustes method that aims to maximize residue similarity. The principal result is a consensus structure showing residue conservation.
Program for presentation of geometrical euclidean constructions.
Utilises own script language for description of the construction.
Construction is performed step by step and detailed report in HTML as well as
final result in JPEG/PNG can be exported.
Xipe-Totec is a companion program to the paper
"An application of statistics to comparative metagenomics"
by Beltran Rodriguez-Brito, Forest Rohwer and Robert Edwards
BMC Bioinformatics 2006, 7:162
doi:10.1186/1471-2105-7-162
A program which simulates the motion of particles due to electric charge and gravitational force. Calculations are done in two dimensions, without care given to real world factors such as air resistance, although such functionality may be added later.
SqW is a mathematical program for caculating and solving equations of type f(x)=0. It also builds simple graphs and has syntax analyser. Functions: sin(x), cos(x), tg(x), lg(x)... LEAVE YOUR RESPONSES ON FORUMS
Cleaver is a program for comparing restriction endonuclease digests of orthologous DNA sequences from different taxa. It performs virtual restriction digests and searches for endonucleases that cleave DNA fragments from given taxa but not others.
Dodona is a molecular dynamics program which aims to treat nanostructures. It is provided with a basic interpretater language and can easily be extended with plugins. It supports basic matrix and vector manipulation in a Matlab/Octave-fashion way.
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Brabosphere is a multiplatform application with two main uses: a 3D molecular visualisation tool and a graphical frontend for the quantum chemical program BRABO.
JJFMapper is a cartography program for PHP. Serves maps realtime and/or saves them to disk. Can read ESRI Shapefiles and GPX files. It streams, saves, or returns an image via the GD library. It is controlled by an easy to learn XML config document.
Ultimate Scientific Calculator (USC) is a program to perform calculations with extreme precision on both extremely large or small numbers, and provide too many built-in and user-defined functions and formulas.
This program tries to simulate a simple computer. Users can write assembly programs for this simulator, which can be loaded and interpreted as instructions. An OS is also included with it, providing process dispatching and file system functions.
MOPAC7 is a semi-empirical quantum-mechanics code written by James J. P. Stewart and co-workers. The purpose of this project is to maintain MOPAC7 as a stand-alone program as well as a library that provides the functionality of MOPAC7 to other programs.
Soft for ab initio and MD simulating of water system. Contains program for ICE: construct ice, specific monte-carlo simulation, proton rearrangement calculations; for PDB-water: calculate rotation energy profile, for Effective Fragment simulations.
mapce is a program to navigate on a digital topographic map on Windows CE handhelds. Windows XP is also supported. The map is read from various bitmapped file formats. The map is centered to the current GPS position, or if desired, the center can be sele
A new program currently undergoing development that includes topics such as Physics, Psychology, Philosophy, Greek Heroes, and various Quotations. Images and biographies/lesser known figures and theories will accompany the above.
Microarray Explorer (MAExplorer) is a Java microarray data-mining bioinformatics program.
It includes data management, graphics, statistics, clustering, reports, gene data-filtering, user
written MAEPlugins, documentation, tutorials, demo data.
weather-interpreter is a c++ program interpreter for weather data stored in a text file. Statistical data (highs,lows,avg, max, max time, min,min time) for inside and outside temperature, humidity, winds, barometer, dew point and precipitation.
ea-fold is a platform to perform protein folding simulations by means of evolutionary algorithms. The program implements a parallelized distributed evolutionary algorithms and a flexible force field.
ABSim is an Agent-Object-Relationship (AOR) simulation system based on a Java program library. The development of ABSim has terminated. Its successor is <a href="http://oxygen.informatik.tu-cottbus.de/aor/?q=node/2">AOR-JSim </a>
This is an easy-2-use Printed Circuit Board designer program with user-friendly interface and with some interesting capabilities. The full source and the internals are well documented.