Open Source Scientific/Engineering Software - Page 6

To provide a bunch of useful applications for daily use. The first of those applications was donated by NIH\'s DECA, it\'s called REX and is a Request/Bug tracker. All applications will be Struts 1.1 and greater based.

Equipment/instrumentation booking and usage accounting system. Designed primarily for use in academic laboratories where a number of users share a set of instruments (e.g. NMR machines, microscopes, fume hoods).

Butler is a program that can take natural language input and search for the information that the user wants. It is in C# .NET. For example, the user might say \"Tell me about the Grand Canyon.\" The program would say, \"The Grand Canyon is in Arazona.\"

C-squares is an easily implemented method for storage, querying and display of spatial data locations, based on a hierarchical, grid-based representation of the Earth' surface. Source code for encoding, decoding, mapping, etc. is provided via this site. Additional support is available by contacting the system developer, Tony.Rees@marinespecies.org; see also the c-squares home page at http://www.cmar.csiro.au/csquares/ .

A collection of tools for working with the comparative data analysis ontology including import/export facilities for common phylogenetic file formats, and also a triple-store framework.

Project MOVED to Codehaus New location is http://esper.codehaus.org The Esper project aims to provide a general-purpose event processing facility in Java for complex event processing of real-time, high throughput data streams.

CLADlims is a wed based laboratory information and data management system for animals and their measurement records. It is designed to track the weight and tumour growth of the animals, visualize the data, compare data, inform the user for any alarming measurements as well as keep any other data related to animals, cages and experiments. Users can submit the data directly from the measuring facilities to the database using a mobile device (tablet or phone) or any computer with a modern web browser. Multiple tumours per animal can be tracked. With CLADlims you can improve efficiency by getting rid of the text files or spreadsheets and save time and money.

COLDIC is an integrated lexicographic platform for creation and management of electronic lexica. Generates itself automatically from a DTD with the database schema and provides human interfaces (query and insert tools) and machine interfaces(webservices)

WEB interface for the design, process and monitor inter-application data flows. It’s a message queue EAI. Written in Perl, Tested systems : Linux and HP-UX, WinXP is planned Supported Connectors : RDBMS, , LDAP, EDI, CSV, XML, HTML etc ...

Many thermodynamic, fluidmechanic etc calculations need special informations about the used material ( resistance against heat for example). This values will be collected in a databasesystem. The calculation will be done on an appserver.

The information system (IS) “Cantharella: Pharmacochemical database of natural substances” share and sustain pharmacochemical data of all organisms collected for the study of their natural substances, with a controlled access via internet.

A web-based groupware application for Linux with PHP, MySQL, Apache, SSL oriented to forensic laboratories. Applicazione scritta per Linux con PHP, MySQL, Apache, SSL, finalizzata alla condivisione di dati nei laboratori forensi.

Causal Analysis Real-Time Event Filtering System

CAVOR is an engine for building apps that involve both graphic and text/numeric data. Primarily GIS is the initial focus, but consider also CAD, CASE, project management (eg PERT charts), and others. Built-in scripting, C API, also supports Tcl and Java.

Fast search using a standard SQL on Oracle or PostgreSQL database. The package includes the database creator, loader and web application. It supports SMILES and SMARTS substructure searches, similarity search, stereochemistry.

A desktop program to manage research notes and citations. Uses any browser as a front end to store data on a local database on your computer.

Cinefile is a prototype of a category-based method of database exploration. It allows the user to identify abstract categories of films by providing examples of category members, learns to classify films as belonging or not belonging to those categories, and provides a graphical interface for exploring and comparing categories. Cinefile is designed to work with data retrieved from the Internet Movie Database (imdb.com). This data is used for classification and is the subject of the category-based analysis. Cinefile was developed by the University of Mary Washington's Computer Science department (http://cas.umw.edu/computerscience).

A Map Server, Viewer & Editor partially implementing the W3 standards for GML & SVG with some extensions to aid in designing and maintaining the PSTN cable networks (and other networks) in city scale.

ClinStudyWeb is designed to provide a flexible infrastructure for managing patient and assay data from clinical studies. It uses a plugin system for study-specific web forms and arbitrarily complex test classifiers, and supports XML import/export.

Database for hospital doctors and nurses to keep track of their patients. The database will be of use in the advent of hospital at night, weekend handovers and produces 'sign-out sheets' for all of your patients.

The collaborative framework Conzilla has primarily been developed to enhance the concept browser Conzilla (http://www.conzilla.org) with collaboration facilities. The Collaborilla framework is generic and can be used by other projects as well.

New version moved to http://github.com/ctuning/ck Collective Mind framework (cM) is an open-source plugin-based schema-free repository and infrastructure for collaborative, systematic and reproducible research and experimentation. This 3rd version (started in 2006) helps to implement, preserve, share and reproduce the whole experimental setup as connected modules and data. cM uses crowdsourcing to leverage knowledge and computational resources of multiple users. For example, it includes multi-objective GCC, LLVM and ICC auto-tuning scenarios using shared benchmarks, codelets, data sets, tools, and combined with classification and predictive models. cM includes OpenME interactive interface to open up and expose internals of various third-party tools such as GCC, LLVM, run-time systems, etc. and connect them to cM through dynamic plugins that allows online analysis and tuning of programs and architectures. Live repo: http://c-mind.org/repo

Free to join for developers who support the Free Software Foundation cause. This is my research project from 2003, which I recently updated with acceleration- and console changes (Surround Sound, Doppler Effects, Device Updates, Physics) in a long weekend but project should be considered abandoned. Additionally, the Performer libraries have been abandoned by Silicon Graphics. Minor setup- and make reconfiguration bugs, no changes planned. The Command Centre is a Simulation Programming Framework for advanced Command and Control Simulators on Linux/Windows using C/C++ and Java. The Framework integrates with Leading Tools like Visual Paradigm (UML), Net Beans 7.0 (Java), and Code Warrior (C/C++). The codebase supports building Heterogenous Command and Control Consoles and Accelerated User Attached Audiovisuals. The Command Centre Real Time Simulation Framework (under RT Linux) allows designers to build Fast Prototyped Consoles for advanced Simulations running on Local Area Networks.

CommonMap is an open source map project, forked from OpenStreetMap by a licence problem. CommonMap needs original softwares tuned for CommonMap. Most of software would be useful for any other open source map projects, too.

A collection of Perl modules and programs for bioinformatics. Design intention is to make most common, straight-forward tasks in computational biology as simple, and portable, as possible.