Showing 390 open source projects for "pdf tool python"

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  • 1

    Microarray assosiated motif analyzer

    Cis-element prediction tool from microarray data

    We developed a novel clustering-free method, microarray-associated motif analyzer (MAMA), to predict novel cis-acting elements based on weighted sequence similarities and gene expression profiles in microarray analyses. Simulation of gene expression was performed using a support vector machine and based on the presence of predicted motifs and motif pairs. The accuracy of simulated gene expression was used to evaluate the quality of prediction and to optimize the parameters used in this...
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  • 2
    FidoCadJ

    FidoCadJ

    Simple and intuitive 2D vector drawing for electronics and not only.

    ...There is no netlist concept behind the drawings (so no simulation, and this is a choice) but this allows a great graphical flexibility and ease of use, making FidoCadJ the perfect tool for exchange sketches in forum and newsgroup discussions with a few clicks. Drawings can be exported in several graphic formats, such as pdf. Follow the development live on Twitter: https://twitter.com/davbucci
    Downloads: 28 This Week
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  • 3
    LymPHOS2

    LymPHOS2

    LymPHOS2 Web-App

    LymPHOS2 is a web-based Application at www.LymPHOS.org containing peptidic and protein sequences and spectrometric information on the PhosphoProteome of human T-Lymphocytes. - Nguyen, TD., Vidal-Cortes, O., Gallardo, Ó., Abian, J., Carrascal, M., LymPHOS 2.0: an update of a phosphosite database of primary human T cells. Database 2015, 2015. DOI: 10.1093/database/bav115 - Carrascal, M., Ovelleiro, D., Casas, V., Gay, M., Abian, J., Phosphorylation analysis of primary human T lymphocytes...
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  • 4
    QtiPlot
    QtiPlot is a user-friendly, platform independent data analysis and visualization application similar to the non-free Windows program Origin.
    Downloads: 43 This Week
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  • 5

    PBTK Optimizer

    Application for optimization of parameters in PBTK models

    Physiologically based toxicokinetic (PBTK) modeling offers great promise in environmental risk assessment, potentially speeding up dose-response studies while minimizing animal testing. Some limitations exist in the PBTK field, such as difficulty of model development and a lack of application specific software tools to help modelers. Some parameters used in PBTK models, such as tissue weights, are easily measure. Other parameters can be determined through in-vitro experiments or through...
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  • 6
    DEBay

    DEBay

    Deconvolutes qPCR data to estimate cell-type-specific gene expression

    DEBay: Deconvolution of Ensemble through Bayes-approach DEBay estimates cell type-specific gene expression by deconvolution of quantitative PCR data of a mixed population. It will be useful in experiments where the segregation of different cell types in a sample is arduous, but the proportion of different cell types in the sample can be measured. DEBay uses the population distribution data and the qPCR data to calculate the relative expression of the target gene in different cell types in...
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  • 7
    MCNPydE

    MCNPydE

    MCNP data extraction and display software library

    MCNPydE is a Python library for extracting data from MCNP output file. It requires Python, Matplotlib and Numpy. It is a data reduction tool for MCNP output for ease of results analysis and viewing.
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  • 8
    powerfactory-fmu

    powerfactory-fmu

    The FMI++ PowerFactory FMU Export Utility

    This project has been moved to: https://github.com/fmipp/powerfactory-fmu The FMI++ PowerFactory FMU Export Utility is a stand-alone tool for exporting FMUs for Co-Simulation (FMI Version 1.0 & 2.0) from DIgSILENT PowerFactory models. It is open-source (BSD-like license) and freely available. It is based on code from the FMI++ library and the Boost C++ libraries. The FMI++ PowerFactory FMU Export Utility provides a graphical user interface (new in version v1.0) and - alternatively - Python scripts that generate FMUs from certain PowerFactory models. ...
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  • 9

    pyPIDTuneMethods

    PID controller design and tuning

    pyPIDTuneMethods is a free python-based tool for PID controller design and tuning. pyPIDTuneMethods is based on scipy (numpy, scipy) <http://www.scipy.org/ >, guiqwt <http://code.google.com/p/guiqwt/ >, python control <http://python-control.org/> and pyQt5 <http://www.riverbankcomputing.co.uk >. If you are not familiar with python you can use winpython <http://winpython.sourceforge.net/>.
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  • 10
    CMD Plot Tool

    CMD Plot Tool

    Calculates and plots Colour Magnitude Diagrams from Astronomical data

    ...Development using Python, OOP and a formal software development lifecycle model (Agile) allowed for the creation of an application that can be deployed on multiple systems. It works “out of the box” and does not require any installation of development environments, additional libraries or resetting of system paths. The tool is available as a single application/executable file, with the source code, on Sourceforge.
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    Downloads: 0 This Week
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  • 11
    LaueTools

    LaueTools

    open source python packages for X-ray MicroLaue Diffraction analysis

    LaueTools is an open-source project for white beam Laue x-ray microdiffraction data analysis including tools in image processing, peaks searching & indexing, crystal structure solving (orientation & strain) and data & grain mapping visualisation. Python 3 Code and new features are now at: https://gitlab.esrf.fr/micha/lauetools
    Downloads: 1 This Week
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  • 12
    pyGear

    pyGear

    Precise gear geometry generator for spur and helical gears

    A python gear generator that serves as CAE/CAD-preprocessor for involute gears based on pythonOCC. It allows for the computation of dynamic properties and the creation of exact geometries from a minimal input set. PyGear can simulate the tool geometry and kinematics of standard gear hobbing tools to generate precise flank, tooth root and tip geometries.
    Downloads: 4 This Week
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  • 13
    Xplico

    Xplico

    Xplico is a Network Forensic Analysis Tool (NFAT)

    Xplico is a Network Forensic Analysis Tool (NFAT). The goal of Xplico is extract from an internet traffic capture the applications data contained. For example, from a pcap file Xplico extracts each email (POP, IMAP, and SMTP protocols), all HTTP contents, each VoIP call (SIP, MGCP, MEGACO, RTP), IRC, WhatsApp... Xplico is able to classify more than 140 (application) protocols. Xplico cam be used as sniffer-decoder if used in "live mode" or in conjunction with netsniff-ng. Xplico is used...
    Downloads: 16 This Week
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  • 14

    TimingDrawer

    Text based timing diagram generator

    This tool generates timing diagrams for documenting hardware design. It reads the description from a text file with a simple syntax. It generates vector graphic (EPS, SVG or EMF format). It can be used in command line mode or with a GUI. It is written in Python and works on any platform.
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  • 15
    Nelder Plot Designer

    Nelder Plot Designer

    A Computer-aided Tool for Nelder Plot Design

    Nelder plot (Nelder 1962) is an experimental design for testing a multiple tree spacings in a single plot. The shape of plot is circular with some number of concentric wheels or arcs radiating outward and the spokes connecting the center. The intersections of spokes and arcs are the tree positions. The tree position on different wheels represent a different the tree spacing distance or tree density. This design eliminates the need for separate experimental plots for each tree density. The...
    Downloads: 0 This Week
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  • 16

    CIF2Cell

    Generating cells for electronic structure calculations from CIF files

    CIF2Cell is a tool to generate the geometrical setup for various electronic structure codes from a CIF (Crystallographic Information Framework) file. The program currently supports output for a number of popular electronic structure programs, including ABINIT, ASE, CASTEP, CP2K, CPMD, CRYSTAL09, Elk, EMTO, Exciting, Fleur, FHI-aims, Hutsepot, MOPAC, Quantum Espresso, RSPt, Siesta, SPR-KKR, VASP. Also exports some related formats like .coo, .cfg and .xyz-files. The program has been published...
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    Downloads: 5 This Week
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  • 17
    zCharter
    Charting tools, backtesting tools, and data visualization tools for the most popular cryptocurrencies.
    Downloads: 0 This Week
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  • 18
    Smith Chart Calculator

    Smith Chart Calculator

    Smith Chart Calculator JAVA

    A small tool which allows all basic smith chart actions. This program was created for educational purposes. JAVA RUNTIME REQUIRED Tested on Windows. Some features may not available with other OS (e.g. copy to clipboard) GENERAL PUBLIC LICENSE There is a pdf help file online take a look in the files section. There is also a link available in the program itself.
    Downloads: 15 This Week
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  • 19
    SCRAM

    SCRAM

    Probabilistic Risk Assessment Tool

    SCRAM is a free and open source probabilistic risk analysis tool. The tool is under development to include fault tree, event tree, common cause, and other standard analyses.
    Downloads: 16 This Week
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  • 20
    High-Throughput Tabular Data Processor
    ...The software has been optimized for microarray and deep parallel sequencing data, however it can accept any character delimited tabular data sets. HTDP can also import, process and convert Variant Call Format (VCF) files ver. 4.0, 4.1 and 4.2 (http://samtools.github.io/hts-specs/VCFv4.2.pdf). HTDP provides quick filtering functionality and can process data consisting of single or multiple input files. Citation: Madanecki P, Bałut M, Buckley PG, Ochocka JR, Bartoszewski R, Crossman DK, et al. (2018) High-Throughput Tabular Data Processor – Platform independent graphical tool for processing large data sets. PLoS ONE 13(2): e0192858. https://doi.org/10.1371/journal.pone.0192858
    Downloads: 0 This Week
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  • 21

    transitfeed

    Tools for reading, validating & writing transit schedule info in GTFS

    transitfeed helps to make public transit information projects more successful for agencies and other interested parties. It provides a library to help you parse, validate, and generate General Transit Feed Spec (GTFS) feed files. It contains several parts, including TransitFeed (Python package for reading, writing, and validating feeds); Feedvalidator (command line tool that checks a GTFS feed for problems); ScheduleViewer (application for exploring a feed on a map) and more; each with their own set of instructions.
    Downloads: 0 This Week
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  • 22
    Acoustic Research Tool (ART)

    Acoustic Research Tool (ART)

    Acoustic Simulation Library for Frequency and Time Domain Simulations.

    ART is a flexible simulation framework for wind instruments. It includes a growing library of modelling elements. So far bore discontinuities, branches, tone holes, cylindrical and conical tubes, Bessel horns and bent tubes are available for frequency domain modelling. In the time domain generic bidirectional propagation elements, scattering elements, fractional delays, convolution with reflection functions and general z-domain networks are available and can be described using MuParserX...
    Downloads: 0 This Week
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  • 23
    trnsys-fmu

    trnsys-fmu

    The FMI++ TRNSYS FMU Export Utility

    This project has been moved to https://github.com/fmipp/trnsys-fmu This open-source project provides a stand-alone tool for exporting FMUs for Co-Simulation from TRNSYS 17 models. The current release supports FMI version 1.0 and 2.0. Instructions on installation and usage are given in the documentation, which is provided as part of the download. This documentation also contains a tutorial on how to export a TRNSYS model as FMU for co-simulation and how to link it with a simple...
    Downloads: 1 This Week
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  • 24
    Brick Work Quantity Estimator

    Brick Work Quantity Estimator

    Tool used to estimate the quantity of bricks, cement and sand required

    The Brick Work Quantity Estimator is a software tool used to estimate the quantity of Brick, Cement and Sand required for building projects. It is designed with a feature to input data like brick and wall size in various unit systems.
    Downloads: 1 This Week
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  • 25
    Pootle Django

    Pootle Django

    Online translation tool

    Pootle is written in Python using the Django framework and therefore can be installed on any web server that supports serving WSGI applications. Key localization file formats are supported, including Gettext PO, XLIFF, Java .properties, PHP arrays and many more supported by the Translate Toolkit. Ensures the best quality localizations by automatically detecting common errors made by translators. Integrates user suggestions, terminology, Translation Memory, Machine Translation, and more. A...
    Downloads: 0 This Week
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