Search Results for "linux script" - Page 6
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Showing 255 open source projects for "linux script"
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Este projeto visa controlar através da porta serial um dispositivo. compatível com hardware da Robotica Simples, porem pode ser modificado para qualquer outro produto serial. O Hardware atendido é a placa controladora de 8 reles.
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parastructure is a perl script collection to run the population genetics software STRUCTURE from Pritchard et al. 2000 (http://pritch.bsd.uchicago.edu/structure.html) in parallel on a cluster (beowulf type). Each run of K (the number of populations) is executed separately on each CPU of the cluster trough queue system based on PBS. A summary statistics table and distruct figures (Noah Rosenberg: http://www.stanford.edu/group/rosenberglab/distruct.html) are built at the end of the run. A...
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SDEdumper
Copy multiples feature classes in ArcSDE to a local file geodatabase
Why use it? You can create your own Python script using model builder, but you have to modify the script everytime you want to dump different tables. Using this script you only need to have a CSV with all the table names, that’s it. Purpose: It can be used as an archival and historical database It will make you ArcSDE database portable and shareable -
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nwhess2freq
Calculates frequencies/modes from an nwchem generated hessian
This is a simple Octave script which calculates the frequencies/normal modes from an nwchem generated hessian matrix. The advantage of having a separate script for this is that you can use the same hessian to calculate frequencies for different isotopic substitutions i.e. you only have to run one nwchem calculation. The script is finished in its current form in the sense that it is feature complete. Feel free to amend, translate, copy, steal etc. See the README in the code repository... -
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FastAlign.pl
FastAlign is a perl script which uses the heuristic method of tfasty
FastAlign.pl provides a more intuitive output to find exon-intron junctions. The query string is in amino acids and the hit string is in nucleotides. There are extra nucleotides at the end of the hit string (option -diff and by default = 10), that allow to verify if the intron start with common rules (5'-GTGCGA-... for group II intron and after an exonic T for group I intron). If you have Emboss, you can genarate a graphic with option -graph 1. Dependencies: - Perl - Bioperl - UNIX... -
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nwbas2ecce
nwbas2ecce converts nwchem basis set files to the ECCE format
The basis sets included with ECCE have -- as far as I can tell -- not been updated for many years. In addition, many of the newer basis sets that come with nwchem aren't included, such as the def2- series. nwbas2ecce is a python script that aims to automate as much as possible of the conversion process of a nwchem basis set file into the files necessary for ECCE to included it in the basis set tool. The process isn't completely automatic, but I also believe that it shouldn't be to... -
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RSAT
A script to perform SAT attacks on RSA
SAT solvers are being used more and more in partial key exposure attacks. The scope of this script is to show that SAT solvers can be used in partial key exposure attacks of RSA with very good results. -
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latexdiff is a Perl script, which compares two latex files and marks up significant differences between them (i.e. a diff for latex files). Various options are available for visual markup using standard latex packages such as "color.sty".
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ReferenceFree
Scripts for reference free genomic analysis
These are Python scripts plus C/C++ programs for automating the reference free genomic analysis described in: Kua C-S, Ruan J, Harting J, Ye C-X, Helmus MR, et al. (2012) Reference-Free Comparative Genomics of 174 Chloroplasts. PLoS One 7(11). http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0048995 Analytical concept conceived by CHCannon and CSKua. Original script written in Mathematica by CHCannon. -
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fluids-sh
acquire fluid properties from the NIST Chemistry WebBook
fluid.sh is a shell script which utilized wget to acquire fluid properties from the NIST Chemistry WebBook in a format suitable for further processing with shell scripts or e.g. xmgrace. It supports the full functionality provided by the website! The script takes the same input as command line arguments you need to enter on the web forms. It produces a ASCII text file containing the respective data points in columns headed by a well readable description. The advantage is that you do not... -
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A simple python script for aquarists that figures tank volume, salinity, converts temp & volume, and calculates substrates based on their specific gravity.
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GeoFun
Explore with geometric curves. Create images of spirograph curves,
This software plots spirograph curves. Mainly Epicycloid, Hypocycloid, Epitrochoid and Hypotrochoid curves. You can color the images. Svave images in jpg/png format. Export curves to AutoCAD script file for importing to dwg format. Print your design. -
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NaRIBaS
Unix-based preparation and analysis toolbox for molecular simulations
Unix-based preparation and analysis toolbox for Nanomaterials and Room Temperature Ionic Liquids in Bulk and Slab using bash scripts, Gromacs tools and Matlab functions. NaRIBaS provides a framework that decouples user input parameter and terminal based command lines. NaRIBaS does not replace a simulation software and specific analysis tools like Gromacs, but it allows iterative repetition of tasks while changing specific input parameter. The toolbox is to be understood as a scripting... -
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Dress Up RNA seq
End-to-end automated pipeline of RNA seq packages for an HPC system
The purpose of DressUp is to create an end-to-end RNA seq pipeline in which all of the steps of analyzing data from an Illumina sequencer is done in one step in an HPC environment. RNA seq programs included are TopHat, CuffLinks, CuffDiff, CuffMerge, FastQC, and trimming using the FastX toolkit. DressUp facilitates RNA seq programs by streamlining various packages into a single script. That script executes the RNA seq programs on a batch cluster system. Upon execution of the script, jobs... -
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WTMParse
Python script to parse Unix-like WTMP files
Python script that was originally intended for use in forensic examinations that parses WTMP files from Unix-like operating systems and generates a CSS-styled HTML report containing login terminal, username, log start date and login time/date in a table. Good for postmortem forensic examinations or as a way of getting "last" like information where you don't have the ability to boot the machine in question but can grab the wtmp. -
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Decision Table Preprocessor
Ccide is a Decision Table preprocessor.
Ccide reads a source program, in one of several programming languages, expands all embedded decision tables, and generates the new, expanded source. Ccidew processes C language programs directly. The script, ccide, uses ccidew and m4, to process BASIC, JAVA, CC, C++, BASH, QB, VB, and EX(euphoria), source files containing embedded decision tables. Ccide checks all conditions once and only once, avoiding side effects. Ccide checks tables for conflicts and other... -
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BUHO
BUHO identifies cells and high-contrast cellular objects
BUHO is a MATLAB script for the identification of cells and high-contrast cellular objects according to their similarity to prototype objects -
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Gnuplot2TightPDF
Python script that produces a tight pdf from gnuplot with psfrag text.
Gnuplot is a widely known script based free plotting program. This script (gpt2pdf) makes it possible to generate pdf figures with 2D LaTeX maths on top of it by including psfrag replacements directly as comments in the gnuplot file. The resulting pdf file doesn't contain any extra white-spaces around it and as such can be comfortably included in any (pdf)LaTeX file. Requires: Python 2.4 - 2.7, LaTeX and the system commands ps2epsi and epstopdf which comes in with any ghostscript... -
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zephyr
Experiment automation
Zephyr is a script-driven experiment automation program that works various measurement instruments and actuators. It supports instruments from Agilent, Eco Physics, ICS Electronics, Keithley, Omega, Teledyne and other manufacturers. The script language is XML-based. Syntax highlighting is available. The source code is included in the distribution. Contact the project admin to get SVN access. -
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RICmerge
Improved Isobaric Label Reporter Ion Assignment
This script and underlying data are in support of the manuscript entitled "Improved reporter ion assignment of raw isobaric stable isotope labeled LC-MALDI-TOF/TOF MS/MS spectral data for quantitative proteomics". Authors: Thomas Jakoby, Andreas Tholey and Bart H.J. van den Berg* * = corresponding author bvdberg@live.com -
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qpure
Tool to assess tumour sample cellularity from SNP arrays.
qpure is an R script that uses copy-number and B allele frequency data from Illumina Omni 1M genotyping (SNP) arrays to assess the tumour content (cellularity) of cancer tissue samples. -
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Manning Equation Solver
Calculation of normal depth in open channel based on Manning equation.
Solver for Manning's equation used for determination of normal depth in open channels. This is pre-alfa version for further development. The main executable file is bash script "mansol.sh", which should be run with the name of data file as argument. Some examples are given. During the execution, the main codes located in "sources" directory are compiled with gfortran. -
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network packet generator
a simple packet generator for TCP,UDP and ICMP network packages
You can create different kinds of network packages e.g. ICMP echo request, echo replies, TCP packages with different settings, ... . You can start the programm by typing 'sudo ./start_pg2.sh interfacename'. The script is necessary to suppress the rst-packets from the linux kernel. I created this program to improve my C skills and to gain some experience in network programming. It is a early version and everyone is welcome to improve it ;). I´m from Germany so program and the comments are in German. Sorry for that ;) -
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A PHP script with maps of the World, China, Canada, USA, India, Africa and Europe that allows the user to select the countries, provinces or states by clicking on them or selecting a checkboxes. Selection causes the entity to turn a default color which contrasts with defaults colors of all bordering countries. Thus a patchwork is made to show the history of countries, states or provinces traveled. Added features allow users to download their maps, to blow them up to posters of any...
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this script is to visualize the coordinates data. the input is ncbiblast tabular format or a simple coordinates file. output is a png graph file
