Showing 2463 open source projects for "linux command"

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  • 1
    This is a program for numerical solution of Euler equations of compressible flows using discontinuous galerkin method. The code is written on top of the deal.II finite element library. Code has been moved to https://github.com/cpraveen/dflo
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  • 2
    Reference compression tools for sequence read data.
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  • 3
    Scanner based Bioparsers
    Parsers for biological data based on scanner generators like Flex (C), Re2c(C), Jflex (Java) and Ifickle (Tcl). This scanner generators are providing easier maintainance, development and higher speed than hand written scanners. Scanner output is SQL.
    Downloads: 1 This Week
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  • 4
    Open Source Routing Machine computes shortest paths in a graph. It was designed to run well with map data from the Openstreetmap Project.
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  • 5
    SRMA is a post-alignment micro re-aligner for next-generation high throughput sequencing data.
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  • 6
    strid is a tool to generate string diagrams for inclusion in LaTeX documents. It has a syntax which is inspired of Xy-matrix, but dual diagrams are generated.
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  • 7
    A simple and still alpha Python script to extract features out of an OpenStreetMap (OSM) file into basic Keyhole markup language (KML)
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  • 8
    C++ interface for the MESA Astrophysics Library
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  • 9
    fktorrent is short for "fake torrent". It is a client for the BitTorrent network, which does not send and discards any received data. Otherwise, it behaves like an ordinary BitTorrent client.
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  • 10
    LaCor is intended for physical data analysis in High Energy Physics field. It was originally designed to aid in lambda hyperon correlations research in the Selex@FNAL experiment, but it should be useful for similar studies.
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  • 11
    PhyloSort sorts phylogenetic trees by searching for user-specified subtrees that contain a monophyletic group of interest defined by operational taxonomic units.
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  • 12
    HATS (Haplotype Amplification in Tumor Sequences) is a tool that calls the amplified alleles, and thus amplified haplotype, in copy number aberration regions in next generation sequencing tumor data. The amplified haplotype may reveal gene variants.
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  • 13
    BSmapper - Sequence mapper for bisulfite sequencing reads for DNA methylation studies. Can handle Sanger and 454 reads for mapping to whole genomes or target regions.
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  • 14
    C++ implementation of certain problems
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  • 15
    Enrich and query corpora in the TEI-XML vocabulary. CorpusReader manage very large corpora and corpora containing milestone annotation. It provides tools for enriching corpora with output of linguistic parsers, and for extracting quantitative information
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  • 16
    The sibRNAfold program is a modification of the Vienna RNAfold program for RNA secondary structure prediction through energy minimization.
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  • 17
    KAF2Tiger2 is a KAF (KYOTO annotation format) to <tiger2/> (Tiger2 XML) converter.
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  • 18
    A system that shall predict good days and locations for cross country free flying such as paragliding by comparing current weather predictions with statistics about past weather predictions and flights from online contests.
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  • 19
    The Mars Rover Simulator project is based on the evolutionary robotics paradigm where an artificial agent acquires its skills through the process of artificial evolution. This simulator can be useful to evolve neural network controllers for the rover
    Downloads: 1 This Week
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  • 20
    A tool that determines the winner of a vote through many different systems. Amongth the supported systems are: Borda count, Instant-runoff voting, Condorcet method, Ranked pairs, Cloneproof schwartz sequential droping / beatpath winner.
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  • 21
    Luminous is a set of programs and C++ classes to handle Illumina GTC files.
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  • 22
    A program to calculate and create lists of possible variations (permutations) and selections (combinations) of a given set of elements. Creating the cartesian product of two sets is also possible.
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  • 23
    The Rudify tools are a collection of tools for ontology tagging.
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  • 24
    ByoDyn (http://cbbl.imim.es/ByoDyn) is a software tool for the study of biochemical networks within the framework of systems biology. SBML compatible, ByoDyn is a group effort of the Computational Biochemistry and Biophysics Lab.
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  • 25
    WordNetLMF converts WordNet (http://wordnet.princeton.edu/) lexicographer files into KYOTO-LMF, the LMF dialect used in the KYOTO project (http://www.kyoto-project.eu/).
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