Search Results for "linux command" - Page 52

Randaudio lets you use your soundcard as a hardware random number generator.

GCX provides a complete set of data-reduction functions for CCD photometry, accessible both from a GUI and the command line. It also controls CCD cameras and telescopes, and implements automatic observation scripting.

SPINNEY provides an implementation of helicity spinors and related algorithms for the symbolical manipulation program FORM. The description of this package is published in http://arxiv.org/abs/1008.0803 .

Collection of several multi-purpose Java libraries. --- knowceans-tools = collection of Java utility classes. --- Highlights: --- org.knowceans.util: IndexQuickSort, TableList: apply order of one array/list to others +++ Vectors, ArrayUtils: array convenience +++ RandomSamplers, CokusRandom, ArmSampler, Densities: random sampling and distributions +++ Arguments: command line parser +++ StopWatch, Which, ExternalProcess: runtime stuff +++ ParallelFor: OpenMP workalike +++ PatternString,...

A Linux driver for RTD DM5408 / DM408 ISA acquisition card. A DKMS module and a dynamic library written from scratch but trying to keep same functions structure of its official Windows 98 driver. I don't recommend it for production. I'm just trying to learn writing drivers for Linux with some interest in Electronics Interfacing.

This is a Java-based project for complex event extraction from text and co-reference resolution. Currently the code can read BioNLP shared task format (http://2011.bionlp-st.org/) and i2b2 Natural Language Processing for Clinical Data shared task format (https://www.i2b2.org/NLP/DataSets/Main.php). Event extraction includes finding events and the parameters for an event in a text. The method is based on SVM but other ML algorithms can be adopted. The method details are explained in the...

Amalthea is a collection of scripts (mainly Python, glued with Bash scripts) for *nix systems that helps to simultaneously collect information from multiple laboratory balances oriented to gravimetric measurement of plant transpiration.

For electronics engineers, when using open source EDA tools, one of big challenge is component schematic symbols and footprints. If you are creating footprints for component with more than 100 pins, it becomes very time consuming and challenging to create error free footprints. Here is a simple program to create footprints for open source EDA kicad. The idea is to describe footprint in .csv format and convert .csv to kicad footprint format. At preset program supports Kicad only, but can be...

SimBac is a software package for simulating bacterial genome evolution. It outputs samples of DNA sequences at each generation & allows testing of major evolutionary mechanisms, including mutation, recombination, genetic drift, and natural selection.

BpMatch is an algorithm that, given 2 strings S and T, compute the maximum coverage of T using only subequence or reversed complemented subsequences of S, of minimum length l.

OrthoInspector is a new software system for orthology/paralogy analysis. Its purpose is to facilitate the installation and the maintenance of a database describing orthology/inparalogy relations and to provide tools to exploit these data.

Differential-algebraic simulator in python. Process and control systems are modelled w/ bloc diagrams. It allows algebraic loops, has an automatic steady-state computation, detects singular systems, and uses variable time-step transient integration.

Shrec is a bioinformatics tool for error correction of HTS read data.

Graph-based Extraction and Summarization - a generic graph-based summarization framework. Basic functionality is provided - third-party modules can be plugged in.

OpenBioGeoSim it's a open source software that simulates the stochastic origin and spread of species geographic ranges in a heterogeneous landscape. It's a free alternative based on Gary Entsminger's BioGeoSim.

BFAST facilitates the fast and accurate mapping of short reads to reference sequences, where mapping billions of short reads with variants is of utmost importance.

PyEPL (Python Experiment-Programming Library) is a library for coding psychology experiments in Python. It supports presentation of both visual and auditory stimuli, and supports both manual (keyboard/joystick) and sound (microphone) input as responses.

This project has been moved to https://github.com/loomchild/maligna . All further development will be done there.

SolSNP is a Java-based DNA variant calling tool for Next-Generation Sequencing alignment data. SolSNP uses a modified Kolmogorov-Smirnov statistic and data filtering to confidently and quickly call variants on high-coverage aligned genomes.

Tidal Analysis Program in PYthon (TAPPY) uses the least squares optimization function from scipy to perform a harmonic analysis (calculate amplitude and phases of a set of sine waves) of a hourly time series of water level values.

GLEAN is an unsupervised learning system to integrate disparate sources of gene structure evidence (gene model predictions, EST/protein genomic sequence alignments, SAGE/peptide tags, etc) to produce a consensus gene prediction, without prior training.

RepMiner takes a graph theory approach to the classification and assembly of the repetitive fraction of genomic sequence data. Sequence lengths analyzed by RepMiner can range from full length transposable elements to low coverage sample sequence data.

Smoldyn is a computer program for simulating reactions and diffusion at a mesoscopic size scale. This scale lies between the more traditional microscopic size scale, in which all or most atoms are considered.

This software package was developed to supply a portable decoding package (written in C and callable by Fortran) compatible to some extent with ECMWF GRIBEX routine.

Convert ESRI Shape file (.shp) to Polish text (.mp) for MapEdit.