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Showing 2657 open source projects for "sql command line"
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GeneSim is a code generator for dynamic systems: it takes an XML description of the system and produces the code that executes it. The typical usage of GeneSim is to generate simulators of engineering systems.
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ParsInsert efficiently produces both a phylogenetic tree and taxonomic classification for sequences for microbial community sequence analysis. This is a C++ implementation of the Parsimonious Insertion algorithm.
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virtualStapler
Large Script Workaround
designed to emulate a stapler placed on the 'n' key (yes, that's what i said...) you get this: --------------------------- Web Browser --------------------------- Stop running this script? A script on this page is causing your web browser to run slowly. If it continues to run, your computer might become unresponsive. --------------------------- Yes No --------------------------- which is the Computer's way of saying it's not fair it should be working at 2 a.m. if you... -
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A C++ class to enable prediction of the reflectance spectrum of two overprinted inks (i.e., solids), using the inverted Viggiano trapping equation.
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Javamony
A Student's Approach to the Phylogenetic Problem
Based on the not-so-successful Pysimony (https://sourceforge.net/projects/pysimony/), the same determined student takes another go at the phylogenetic problem. Javamony is invoked as follows: java -jar Javamony.jar [input.fasta] [random / stepwise (starting tree)] [# of bootstraps] [outgroup taxon #1] [outgroup taxon #2] ... Not meant as a competitive phylogenetic inference program, Javamony is an opportunity for me to acquire the Java language while learning to address and solve... -
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qpure
Tool to assess tumour sample cellularity from SNP arrays.
qpure is an R script that uses copy-number and B allele frequency data from Illumina Omni 1M genotyping (SNP) arrays to assess the tumour content (cellularity) of cancer tissue samples. -
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colonyzer image analysis software
Image analysis estimating cell density in arrayed microbial cultures
Image analysis software for quantification of cell density in microbial cultures (e.g. S. cerevisiae) growing on solid agar plates. Specialises in detection of extremely low cell densities. Forms part of the Quantitative Fitness Analysis (QFA) workflow: http://research.ncl.ac.uk/qfa/ Suitable for high-throughput, genome-wide analysis of culture libraries when combined with the following qfa R package: http://qfa.r-forge.r-project.org/ This is the version presented, used and... -
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Modern MATLAB-based modelling software for 13C metabolic flux analysis (MFA). Support available in Google group (https://groups.google.com/d/forum/13cmfa-openflux).
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WebSynonymExtractor
a synonym extractor based on web-corpora and a multilingual translator
This project is an approach for synonym extraction and extending WordNet by the so found synonyms. The python application is realised as a kind of pipe that starts with a web-corpus-reader which is followed by several workers (tokenizers, lemmatizers, ...) and finally completed by a result writer. In contrast to the state of the art approaches, this implementation is based on single words found in the web used as a corpus and translated to other languages. If translations of different... -
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OpenETran
Electric power system transient simulator
During the period from 1990 through 2002, EPRI funded the development of a Lightning Protection Design Workstation (LPDW), which was used by many utilities to assess the lightning performance of distribution lines. Since about 2002, this program has not been available. EPRI decided to release the simulation kernel of LPDW under an open-source license (GPL v3), so it may be incorporated into IEEE Flash and other projects. OpenETran can presently simulate multi-conductor power lines,... -
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Lincalc
A powerful console calculator with a fast and simple interface.
(Graphical Edition Released, BreezyCalc: http://breezycalc.sourceforge.net/) Lincalc is a console calculator designed to provide a quick and simple interface to a very powerful engine. Its parser is based on muParser <http://muparser.sourceforge.net/>. It supports user-defined variables, logical operators for conditions, and a wide range of mathematical functions each calculation that is made is stored in a result variable (Ans1, Ans2..) and can be referenced in equations. It also... -
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SOAPsv
SOAPsv: is a program for detecting the structural variation
This is an approach that complements previous methods for reliable homozygous structural variation identification. Our approach accurately determines genotype and breakpoints relative to a reference genome based on de novo assembly of Illumina Genome Analyzer sequencing data. In this method, we examined only homozygous structural variations because detecting heterozygous structural variations requires assembly of haplotype sequences, which is not yet possible using existing assemblers. -
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ProSym
Software package that facilitates traffic simulation
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Prediction of MHC class I- and MHC class II-restricted T-cell epitopes. Prediction of proteasomal/immunoproteasomal processing of antigens. Prediction of peptide-TAP binding.
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fw2csv
Convert data file from fixed width format table to CSV
Fixed width data files are probably the most annoying data to import into database. This utility allows user to insert user-defined column separators into user-defided positions of flat file table given in fixed-width format. I am using this utility to import astronomical catalogs provided as flat tables at CDS ftp-server into postgresql; Build: $ make all [cc={icc|gcc}] Install: $ make install [prefix=/path/to/your/bin/directory] Example of usage: $ gzip -dc table.dat.gz |... -
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chameleon_14443
Low-cost, ISO 14443 compliant emulator for contactless smartcards
! This website is discontinued ! The new, improved MiniChameleon is maintained as of January 2014 on github: https://github.com/emsec/ChameleonMini ATXmega based emulator for contactless smartcards, designed and maintained by Embedded Security Group at the Ruhr-University in Bochum. -
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Pysimony
A Pythonic Implementation of Parsimony Inference of Phylogeny
UPDATE: After some bug fixes, I've ditched Pysimony for Javamony: https://sourceforge.net/projects/javamony/ Given Python's beauty, I know that someday I will have to finish Pysimony. A student's first attempt at a phylogenetic inference program, written in the simplistic yet elegant Python. Pysimony reads a FASTA file (only ATGC accepted) specified as its only argument. Basic testing has shown that it is slow, inaccurate and most definitely inefficient. An... -
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EToS (Efficient Technology of Spike sorting; Extracellular recording To Spike trains) is an open-source system for spike sorting. EToS contains the programs of spike detection, feature extraction and clustering.
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LightLife
A lightweight Implementation of Conway's Game of Life
LightLife offers a clearly laid out user interface to test a universe without any effort. It support various modifications, can save and open Windows-Bitmaps and has got a build-in database of the most common objects. -
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A new floating-point arithmetic which has uncertainty-tracking and undertainty-bounding capability, and algorithms to test this arithmetic. The code is in C++ (Visual Studio Express 2008)
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A very simple command line tool to convert OSM files to Shapefiles. Written in Java. Think of it as a self-study project.
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System Stability Tester is a multi platform open source clone of SuperPI and comes with a GUI and a CLI. It can be used for CPU and RAM burning, stressing and benchmarking.
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Climate Modeling
Benefit Your Learning of Climate Modeling
The goal of this project is to provide a couple of Fortran code to those students who selected the course of "Climate Modeling" in the department of atmospheric and oceanic sciences at Peking University. 这个项目的目标是给选择“气候模拟”课程（北京大学大气与海洋科学系）的同学提供与课程学习有关的源代码程序。 We are subject to GNU/GPL license and happy to open the code to the public. 我们遵守GNU/GPL协议，并乐于开放代码给所有需要的人。 -
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The program evaluates ordinal expressions and relations. displaying the normal form output in plain text and/or TeX format. It supports notations for ordinals through and somewhat beyond those definable by the Veblen function.
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N-Sense
N-Sense Sensory substitution software
N-Sense is sensory substitution software. Whit goal to make sensory substitution and super senses available to everyone. N-sense uses hearing as it's input port and is(will be) capable to allow multiple senses trough it as vision, magnetic orientation, humidity, velocity,time, altitude... Almost any data from computer can be made into sense and included into project. N-Sense is modular by design, written mostly in c++ to allow optimal processing speed and uses OpenCv for Image/video...
